Microarray Probes on PGSC0003DMT400042667
Probe ID | Chip | Probe Sequence |
---|
CUST_43199_PI426222305 |
JHI_St_60k_v1 |
AATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042667
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Source Transcript PGSC0003DMT400042667 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G09960.1 |
+1 |
9e-30 |
105 |
57/98 (58%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112 |
Transcript Sequence (291 bp)
>PGSC0003DMT400042667 291 pgsc_dm_v3.4
ATGGATGATCGCAAGGAGAAGACTGCACCATGGCTATCAGTGCCACAATTTGGAGACTGG
GATCAAAAGGGTGTGATGCCAGACTACTCTATGGATTTCTCAAAGATAAGAGAGAATAGG
AAACAGAACAAATCAAGAGCCAGTCTTGGAAATGAGGAAGAACTTATTTCCACAGCTAAT
AGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACCCAC
CCATCAACTCCTGGGCCACCATGTGACCGAAAAAAAGATGAGCAATCTTAA