Microarray Probes on PGSC0003DMT400042667

Probe IDChipProbe Sequence
CUST_43199_PI426222305 JHI_St_60k_v1 AATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACC

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042667

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Source Transcript PGSC0003DMT400042667 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT5G09960.1 +1 9e-30 105 57/98 (58%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112

Transcript Sequence (291 bp)

>PGSC0003DMT400042667 291 pgsc_dm_v3.4
ATGGATGATCGCAAGGAGAAGACTGCACCATGGCTATCAGTGCCACAATTTGGAGACTGG
GATCAAAAGGGTGTGATGCCAGACTACTCTATGGATTTCTCAAAGATAAGAGAGAATAGG
AAACAGAACAAATCAAGAGCCAGTCTTGGAAATGAGGAAGAACTTATTTCCACAGCTAAT
AGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACCCAC
CCATCAACTCCTGGGCCACCATGTGACCGAAAAAAAGATGAGCAATCTTAA