Microarray Probes on PGSC0003DMT400042618
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31425_PI426222305 |
JHI_St_60k_v1 |
GATACTGGTAGCTGCTTTGCTGTAACAAGAAATATTGGTAGTATTGTAGTACACAATTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042618
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042618 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G79820.1 |
+3 |
1e-174 |
422 |
223/328 (68%) |
Major facilitator superfamily protein | chr1:30022581-30026771 REVERSE LENGTH=495 |
Transcript Sequence (2436 bp)
>PGSC0003DMT400042618 2436 pgsc_dm_v3.4
GAAAAAAAAAGAAAACGAAAAAGCAACAGCATTGGAGCAGGTGTACCGTCTCAGAGCTCT
CGTAGTTTTTAGATGCTTTCGTGTCGTCATTCTCCTTCCTTCCATGGAACCACTGCATAT
GCACTTGTTTGTTTGCTTACAAGTGAAAACACGTTAGCACCTTTTCTAAGATTTCTCTCC
GTCCCTTTTGCATTAACACGTTTTCCTTTTCACTTTTTCTTAATTAATTCCTTCTAAAAC
TTCACTACCAATATGCAATAGCTAGCCACTCCATTTTCTGCCTCACAAAACGTTTTTTTT
CAGGAGGTTGGCGTATATGATTGGGATTTTTCTTACATTACCATAAAACAGATCACACAA
TATGAGAGGTGGTGGTCTTGCAGATGCTTACTCCATGTACAAGCGCGCATCAACTAAAGA
CCAGTTCACTGATTATGAAGATAGAGAAGAAAATCTAGATCGTACCGAAAATGGTGTGTG
GAAAGAAATTGGAAACCCCTCATGGAAGCGGCCGTTGCCACATATACTGGTGGCAATTAT
TTCATCACTCTTGTTTGGCTACCATCTTGGGGTGGTTAATGACACTCTAGAAAGCATGTC
TTTGGACCTTGACTTCAGTGGCAGCACCTTGGCTGAAGGTCTAGTTGTGAGTACATGTTT
GGGAGGTGCTCTTTTGGGCTCTATATTCAGTGGTTGGATAGCAGATGGGGTTGGTCGTCG
GAGAGGCTTTCAACTGTGTGCTCTACCAATGATAATAGGTGCTTCTATGAGTGCTGCAAC
CAGTACTCTTGGAGTTATGCTTCTTGGAAGGTTATTTGTTGGAATAGGGATGGGCCTTGG
CCCTGCTGTTGCTGCTCTCTATGTTGCAGAGGTATATGATATTATCTTTTGCTCCTAATT
CTATCTTTTTAGTTACATTTAATTTGTTTGACCAGGTTTCACCAGCTTTTGTTAGAGGCA
CTTATGGGAGTTTCACTCAGATCGCCACATGCCTTGGGCTCCTGGGATCTCTTCTTATTG
GAATTCCTGCCAAGGATACTGCTGGTTGGTGGCGAGTTTGCTTTTGGATATCCACCATTC
CTGCTGCATTACTTGCTGTTTTGATGGAATTCTGCGCTGAGAGTCCTCACTGGCTTGTTA
AGAGAGGAAGAATTGATTTAGCTGAAGAAGAGCTTGAAAAGCTTATGGGAGCATCACATG
TTAAATATGCCATTGCAGAAATGTCAAAGACAGACAAAGGAGATGAGGTGGATAATGTTA
GGTTTGGAGAGCTACTGTATGGTCGTCATTTTAAAGTGGTTTACATTGGATCTGCCTTAT
TTGCTTTGCAACAACTATCTGGAATAAATGCTGTATTTTATTTCTCTTCAACTGTTTTTA
AAAAGGCTGGAGTACCTACAGACACTGCAAATACATGCGTTGGGATTGTAAACTTAACAG
GGTCTATTATTGCAATGATGTTGATGGATAGGCTTGGGAGGAAGGTGCTTCTAATTGGGA
GTTTCTTGGGCATGGCAGTCGCAACGGGTCTTCAAGTAGCAGCTGCGAGTTCATTTGTAC
CAAGCTTTGCAGTTTTATACCTATCAGTTGGCGGGACCCTACTGTATGTGTTGGCATTTT
CTTTGGGTGCTGGTCCAGTCCCCAGCCTCCTGCTGTCAGAGATATTTCCTGGCCGGATTA
GGGCAAAGGCAATGGCTTTATGCATGGCTGCACATTGGGTCATAAATTTTTTAGTCGGCC
TTCTGTTTCTGCCGATGCTTGAGCATCTTGGACCACAAATAGTGTATGCGGTCTTTGCAG
GTTTTTGCTTGTTTGCAGTGGCCTTTGTGAAAAAGAATGTGGTGGAAACAAAAGGAAAAA
CATTACAGGAGATTGAGTTTGCCCTTCTTCCGTCTCATTAGTTGGTGACTAGATCACACT
CTATATTAAGTTCAGATTGGAAAATGTTAAGGTCCTAGAGATTGAACATCCAAATTCTTT
GCTATAGCTATTTCTTGATTTGTACAATTTTGGAGTGTGTTCATAGGCAGGAAAGGCAGC
AATGACGAACAATCAAGATAAAGATTGTCACAAAGCTAGTTTTCATAGGGCAATTGTCAC
TCTGCTTATTTTTGCTGCTTTTCTGCTCACTCCACTGGTCGGTGACTATTGCCTGAGGGA
GCATGAAACTGCATCTGCCTCGGCCAGCAGTAGATCACATATATACTACAGAGTACCTAT
TGTTGTTATTTTTGTATACCCTTTCTTTTAATTTTTACCTTGATCTGATTTTTGTAACTA
GCATGGCACAGAAAGGCTACTCTGAACATTCCTTACAGAAATAATGTTACAGATTTTGAA
TTAGAAAGATACTGGTAGCTGCTTTGCTGTAACAAGAAATATTGGTAGTATTGTAGTACA
CAATTGATTAATGTAGCTGAGATTTTTTCATATTTG
