Microarray Probes on PGSC0003DMT400042610
Probe ID | Chip | Probe Sequence |
---|
CUST_31526_PI426222305 |
JHI_St_60k_v1 |
TGGGAGCTTTGAATACTGCAAATTAATTTTTGGTTTCCATTCTGTCCCGGGATTTTCTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042610
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Source Transcript PGSC0003DMT400042610 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G52140.1 |
+2 |
3e-33 |
123 |
79/213 (37%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208 |
Transcript Sequence (882 bp)
>PGSC0003DMT400042610 882 pgsc_dm_v3.4
CAAAAACAAACTCTCCTCTAAAGTTTTCATCAATATTTGTCTCTCGTGAACAAACAAATA
TTCAATTCAAAAGAAAAAAAGAAAAACTGCTCGTGAATATATAAAGAGAGTACTTAATTA
GAGAGAAAAAATGGATCAAAAATTGCCAGTTATAGCGAAAAAGTTCTGGAAGATAGTCCG
CGTGGCTTACTTCATGTTGAGGAAAGGATTATCATCAAAGAGGAAACTAATGTTCGATCT
CAATTTATTAATGAAACGTGGTAAGATTGCTGGAAAAGCTGCCTTCCAAAATCTGATGTT
CCAGGGCCATAATAATATTCATCAATCAACTTCAAAAGAGTATTACGAGTTCAGCTGCAG
TAACAGCCCTGCTTTTCACCTCCCCTTCAACACCAACAAGCGCATTAGTCAGCCTGAACA
CGACGACGTTTCAATGATGAACGCTGCTGTTTTGAAGGCATTAGAAATCCTTCAGAGCGA
AACAGCATCACCTGCTTTGCCTGGATTCGGAAGGACTCCAACGGTGAGGCAATTAAGAAT
CACTGACTCGCCTTTCCCACTAAGAGAAGCTGATGATAATGGTGACATGATTAGCCACGT
TGATGAGAAAGCTGATGAATTCATTTCTCGATTCTACAGAGATCTGAGAAGAGAGGCTGC
ATCTGCTTTTGCTTAATGTTTTCTTCTTTTTTTTAATTAGATCATGGCAGTAATTATATA
TAGAAATACGTGCAGATTGGGAGCTTTGAATACTGCAAATTAATTTTTGGTTTCCATTCT
GTCCCGGGATTTTCTTTCTCTTAATTTTCTCTTTTTATGTAATTATGAAAATTATTAATG
TGATGATACCCGTTTGTTTCTTGATTACGGTATACAATTTTC