Microarray Probes on PGSC0003DMT400042608
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31588_PI426222305 |
JHI_St_60k_v1 |
TTGTTTCATCCTATAATTAATACATTCAAGGGCTCTGAGTAGCCTGAAATTTTGCATCCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042608
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042608 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G52140.1 |
+3 |
8e-23 |
90 |
70/186 (38%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208 |
Transcript Sequence (845 bp)
>PGSC0003DMT400042608 845 pgsc_dm_v3.4
AAACAACTCTCCTCTAAATTAAAGCTCTCTCTTGGCTTTCATCAATATTTGTCTCTCCTT
CTCAAGTTAACCAACAAAAACTCACAGTTCAAAAAAAATAAAAAAATTCTCCGTACGTGA
AAATGGATCAAAAAATATTGCCAGTTATAGGGAAAAAGTTCTGGAAAATAGTTCGTGTGG
CTTATTTCATGTTGAGAAAAGGATTATCATCAAAGAGGAAACTAATGTTCGATCTCAACT
TATTAATGAAACGTGGTAAGATTGCTGGAAAGGCCGCGTTCCAAAATCTGATGTTTCAGG
GCCATAATAATAATAATATTCATCAATCGATTTCAAAAGAGTATTACGAGTTCAGCTGCA
GTAACAGCCCAGCTTTTCACCTCCCCTTCAACATCAACAAGCGCATTAATAAGCATAATC
AGCCTGAACACGACGACGTTTTAATGATGAACGCTGCTGTTTTGAAGGCATTAGAAATGC
TTCAGAGCGAAACAGCATCACCTGCTTTGCCTGGATTCGGAAGGACTCCAACGGTGAGGC
AATTAAGGATCACTGACTCGCCTTTCCACTAAGAGAAGCTGATGATAATGGTGACATCAT
TAGCCACGTTGATGAGAAAGCTGATGAATTCATTTCTCGATTCTACAGAGATTTGAGAAG
AGAGGCTGCATCTGCTTTTGCTTAATGTTTAACATTTTTTTTTCTTGTTGGGGTATTCCG
GTAATTTTTAGAAAAAGTTGAATGTTAAGAGTTTATAAATGTGATGATACCCTCCTTTAG
TTAATTTGTTTCATCCTATAATTAATACATTCAAGGGCTCTGAGTAGCCTGAAATTTTGC
ATCCA
