Microarray Probes on PGSC0003DMT400042552
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31467_PI426222305 |
JHI_St_60k_v1 |
ATCTGGAGAGTATAGAATGTATGCAGACTGACTGTGTTTTCGATAGACTCTCGAGTCAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042552
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042552 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G25735.1 |
+1 |
2e-06 |
45 |
33/86 (38%) |
unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10975345-10975704 REVERSE LENGTH=119 |
Transcript Sequence (648 bp)
>PGSC0003DMT400042552 648 pgsc_dm_v3.4
TTATACTTTAGCTTCCAAAACTGTAACAAAAGTAAAAAGCTTTCAGATCACACACAAACT
GTTCTGTCTACTCTAATGGATGCCGGAGCATGGTGTGATTCCGACGACGGAAACTTCTGC
TGGAGGCGGTGTTACTCCGGTAGAGAATACAACCGTTTGGTATCCTATAAGTTGCCGGCG
AACAGATCAAGCAGAACGCCCATCTGGAGACTGATATGGAGGAAGATGAAGAAAGAGAAG
AAGCGGATTTACGATTGTTCAAATTCAATGCGGTTTTCATATGATCCTCATTATTATTTG
CAGAATTTCGATCAAGGTTCAATTTCGACCGATGTTGATGAACTTTCTCGTTCCTTCTCA
GCTCGATTTGCTGTTCCCTCCAGGATTTTCACCCATGACGAATTACTGGACTAATGGAGA
AAACAATAATAACATACTCACTGTCGTACCACAACTGAGATCTGGAGAGTATAGAATGTA
TGCAGACTGACTGTGTTTTCGATAGACTCTCGAGTCAAAAAAAAATACAATGGAGGAAAA
CAGGGTAAAATTTGTTGTCATTGTTATCATACAAATTACTAAACTGTAATTCATCTGTTA
TCTGTTGTTAATGATAAAAATTGATATGTGTAGACTGTTGATGCTCCG
