Microarray Probes on PGSC0003DMT400042530
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31449_PI426222305 |
JHI_St_60k_v1 |
TTTGTGAATGTAGGAAAGGACTTTCGGAGTATTATGATGGGAAATCGGAGTCATTTACGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042530
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042530 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G26288.1 |
+2 |
6e-08 |
52 |
30/77 (39%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). | chr4:13307623-13308217 FORWARD LENGTH=155 |
Transcript Sequence (1031 bp)
>PGSC0003DMT400042530 1031 pgsc_dm_v3.4
GAAAAATCCCATGTTTTTTTCCCAATCCTAAATCCTAATCGACCAAAAAGTTGTTGTTTC
TTTTCACTTTTTTCTTGTTCTTAGTATACCTAAAATGGGTGATGGCAATATTGAGATGTT
TAAAGATAAATGGTTTCAATGTGGTAATAATTTGGAGAACAAAAATTGTTCTTCATGGAT
GATTAATGAAGGTGATAATAATAGTCCATCGTCTTCGTCGATCGGAGAATCATCGTCAAC
GATTTCGATTTTAAATTGTAATTCTTCACTAGAGACAATGGATGATGCATCTTCGGATGG
GGCTTTGTCCGATTTATCGACTCTTATGGCTCAATTGCCAATCAAGTAAGCGATTTAAAT
TGAAATTATTTAACTTATATACACTGATAGTATAACATCAGTATTGTAATATGTGAAGAT
TTGTGAATGTAGGAAAGGACTTTCGGAGTATTATGATGGGAAATCGGAGTCATTTACGTG
TTTGGGAAGAGTTACAAGTTTAGAAGATCTTCCAAAGAAGGAAAATCGTTGTAATAGGAA
AATGAAGAAGTCGTTATACAAGTCATATACACTTCCTAAGCCAATCATGTTCAAGAAAGC
TTCAAGGAGTTCATTTTTATCATCTTGTTATACTAGTAAAAGGCCAAGTTCTTCTATAAG
CAGGAGCAGCAGGCCACCTCTAATTCCTGTACAAAGAACCTAGTTTTGCTAATTAGTTAG
ATATATGATCACCTTAATTAGCATATTAACCTTAATTATTCCTTTTTAACTAATAAGTAG
TGAGGAACAAATGGAAATGAAAAATTTACGGATTTTGTAGACATGGTATCATGATTGATT
ACTAATTCTGACTTGGTAACCCCACTGTGGTTGCCACACCTCTTTTCGTGGAAGAATTTG
TTTGATTATGTTTTGTAATTTCGTAATTTAATTTGTTTATGTCCAAGTGAGTTTAATGTT
TATTAGTTAGGTCCTAATCACTCTCCTTAACATTAATGACATGATTTGTGTTCTAATAGA
TTGATCTTTAA
