Microarray Probes on PGSC0003DMT400042519
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_18480_PI426222305 |
JHI_St_60k_v1 |
TTCACAAGAGAATGGTGAGACATGATTATACACTTATAATATAAATACAGGGTTTCGCCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042519
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042519 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G04745.1 |
+1 |
4e-08 |
50 |
23/44 (52%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2412863-2413303 REVERSE LENGTH=146 |
Transcript Sequence (636 bp)
>PGSC0003DMT400042519 636 pgsc_dm_v3.4
ATTTTCTCTACACCCTTGGAGAAAATAAAAATATACTTCATCATGAATAGTCTTATGAGT
AAACAACAATATTATGGTTACTCAAAGATGGAAATTGATGACCCTGAAGAGATGCAACAT
AGAAAAGCACAATTCTTGATTTACAAGTCATTAAAGAAATCAGATTCTATGAGAAAGCAA
CCATGGCTAAAAGTGAGAGTGTGTAAGTTGAAGATCAAGATTGGGAGAAGATTAAAGAGA
TTTAGAAAGAGCATATTGTTGACATTTTCTGTTACTAGAGGTGGAGTTTACAAACAATTT
ATGTCACAATTGAAATCTTGGAAAGGTTTGCTTAAGAGTAGAGAGACTATGGTCAGTACT
ACTACTACTCTTCAACCAATGTTCACTTGAAGTTTTCGTTACCAAACAAAGTTGAGGTCG
GCTGTATGAATCTCAATCTAAAAAAAATGAATGAGAAAAAAAACAAAAGAAGGAGCAGAG
CTTTTTTATTTTTTATTTTTTTTGGCTTATGTTTTGTTCACAAGAGAATGGTGAGACATG
ATTATACACTTATAATATAAATACAGGGTTTCGCCCTTTCTATAACTATTGATGTTCAAT
ACAATTTTCCTCATGTTATTTTTGGAAATTTAATTC
