Microarray Probes on PGSC0003DMT400042096
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_21985_PI426222305 |
JHI_St_60k_v1 |
TTTGATTACTAATGACAAAAGGATACCCATTCAGCAAACTCGATTAATGCTAATCTCACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400042096
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400042096 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G14450.1 |
+1 |
9e-17 |
75 |
55/118 (47%) |
unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8309519-8309896 FORWARD LENGTH=125 |
Transcript Sequence (817 bp)
>PGSC0003DMT400042096 817 pgsc_dm_v3.4
GAATAAAATAAGATGCTAAAGTTTGTGTGCGAATAACGTCACATAAAATACTGCTTTTGT
ATAGAGAAAACCTCTCCTTTTCTGTGGTTCCGTTCCTTTGACCTTTGACTGAATCTCTAT
CCATTCCTTTTTCCGCTTTAACACCCTCCGCATCGTGCCTTCCACATGCCCCTATTTATA
CCTTTCTTCCCTTATCTGCAACCCTAAATCCACATTACAATTAATTACATGGCAGACAAC
AAACCACTAATTTCTTCTTCCGGCGACCGGCGGCAACCAAGCCGGTTACAACGCAGAGCC
CCGGCGTCGATACAGGTAGATCGAGTAACCGATTGGAATGTTGCAATACCGCTTCTGTCG
CCGCTGATAACTTCTCCGACGTCTCCTGAATCGGACAACTTGAAGGCGGCGATAAATGCT
TTTTCCAGCTCGGTTCATAAGGAAGAGGTGAAGAAAGAGCATACAGAGAAGCCGGTGATG
GTGTTTAAGAAGTGGCAGCATCCGGCATCGCCGTTCTGTTACGAGCCGGCTCCATTGGTG
CCATTTGTATGTGCAGGAAGCGCCGATAGACGATGAGAATTTATAGATCTGGATCTTAAT
GTTAGGTAGCTGTTGATACAATCTGATTTGTAATTGGCGATTGTAAGGGCTAATGTAAGA
TTTAGTTTTAGTATTCTAAACACTTTTTTGTTAATAATCTCTCTCTAGTGATTTAGCCCT
TGTTCTGTTCCTACAATCTGTACAATTAACAAGTTTTGATTACTAATGACAAAAGGATAC
CCATTCAGCAAACTCGATTAATGCTAATCTCACCTTC
