Microarray Probes on PGSC0003DMT400041952
Probe ID | Chip | Probe Sequence |
---|
CUST_22062_PI426222305 |
JHI_St_60k_v1 |
CTTCTTATATGAGTTTTTGCTCCGTCAAATTTTAGTATTTTCGTGCGGTGAATAATGTGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400041952
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400041952 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G22970.1 |
+2 |
2e-85 |
276 |
198/431 (46%) |
Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370 |
Transcript Sequence (2098 bp)
>PGSC0003DMT400041952 2098 pgsc_dm_v3.4
AGAAAATCATAGACAGTACAATTCACCTTCTTAACTACACCCACTCTATATAAGCTCCTC
AAAACCCACTCTCTCATTTCAACTTAACTTCACAAAAAACCAAAACTGAGATAAAAATAG
AAACAAAGAAGAAATGACATAATCATTTACAAATATAGGCCCACTTTTTCTCTCCTTCAC
ATAATTCTCTCCTTCCCGTGAAAAGGAAAGGTATTCCGGCGACTATTGTTACACTCATTC
TATTCTTGTTCAACTACGCTAACAACTCCGAAGAGTGAAAGGAAGAAAAAGGTATCAAAA
TTTGACAATTTTTATTTTTCTATCACATTTGGAAACGTGAAGATGATAATGGTGAACGGA
TTATGCGCGATTGTATTAATTGGTTTTTGATGTGTGAAAAGGGAAAGGTGAATTAGGTGT
GAATGAATTATGAATTCGCTGAACTTGATTTTCTTTTCAAAGCATTGATTTCTGTGAATT
TGCATGTATTTCTGTGATTAAGAATTTAGGCATTTAAAGGATTCTGATCTAGACACACAA
AGCGAGTAGGTTTTTAAAGCTCTGAGAATTCAGCAGAAAATGACAAAAGAATATAATTAA
GCTGTAGAGAGAGAGAGTTTTACAGTAGAAGAAGTTGTACCTGTTTTGGTTGTGGTTGAT
AGACATGCCTTTTCCGATGAAGGTTCAACCGATCGATTCTTCAACATACAGAGAATCGAT
CAAAAATGATGCAGTAAAGCCTTTGCTGAAATCACGACTTAAAAGGTTCTTTGATCGGCC
GTTCCCTAGTGTTTTACGGATTTCGTCGGCGGCTGAGAAGCCAGGTGCCGCCGGCGCTGC
TAATGATGGACCAGGCGCTGAGTTTGAGCCGAATTCGGTTTCTTTGGACAAATTGGTTCA
GAATTTCATAGAAGAGAACAATGATAAGTCGTCTGCCGCTAGATTTGGCCGTAAATGCAA
TTGCTTTAATGGCAACAACGATAGCTCCGATGATGAGTTTGATTTCGACTCTGTTACCAA
CTCCTCTTCGTTTGGGGATTCTTCCGATACTCTCAAGAGCTTAATTCCCTGTGCAAGTGT
TACCGAGAGGAATCTATTAGCTGAAGCTTCAAAAATCTTCGAAGAGAACAAATCTTGCAA
GCGTAAGGACGATTTGAGAAAAATTGTCACTGATGAACTTTTAGCACTTGGCTATAAAGC
TTCAATCTGCAAATCCAAATGGGAAAAAGCTTCTTCTACTCCTGCAGGTACATGCTTCGT
TCTTCTTATATGAGTTTTTGCTCCGTCAAATTTTAGTATTTTCGTGCGGTGAATAATGTG
CTTTTTTTTCTAAATTTATTCGATATATTCAGGTGAATATGAGTATATTGATGTGATAGA
GGACGGCGAAAGAGTGATACTCGACGTAGATTTCAGATCTGAATTTGAAGTAGCGCGATC
GACGGGAAGGTATAAATCAATTCTGCAATTGCTCCCGTTTATCTTCGTCGGCAAAGCCGA
TCGGCTTCTGCAAATAGTGTCAATCGTCTCAGAAGCAGCTCGACAAAGCTTGAAGAAGAA
AGGTATGCACATCGCTCCATGGCGCAATCCGGAGTATATGAAAGCCAAATGGCTCAGTCC
CTATACTAGTCTCGCACCTGCTGTGGAATCAAACGCGGCTGCTGAGATCACGGAGTCGGA
AAGTGAGTACGGTGAGTTGGACTTGATTTTTTCTGATAAAACGCTACCGTTAGACTCCGA
TCCAACAACAGATCCGTCGGAGAATACTTCCGGCGAGGAAGAGAAGCCGGTGATGATGAC
ATGGCAACCTCCGGCAGTGAAGCCAAAGAAAACCAAAGTGGTTGTCACTGGATTGGCTTC
CCTTCTCAGGGAAAAACCCTAAAAGATTTTGTTAATTCTAACATTGTGAATCTTTTGTTT
TGTTTAGCGAGTAATCGGAAATTTAGATAGATGAACGGAAACTGTTTTTTTCATTTTCCG
TTCCGTTTTCTGCTCCTCTTTGAAAGGGACAAAGGGTACTGTAATAGAATCTAGAACCAA
CCTCTTTGCTGTAATGAAAAAGTAAAGAATAAAGAAAATATTATTCTTAATATTTTAC