Microarray Probes on PGSC0003DMT400041950
Probe ID | Chip | Probe Sequence |
---|
CUST_21988_PI426222305 |
JHI_St_60k_v1 |
CTTCTTATATGAGTTTTTGCTCCGTCAAATTTTAGTATTTTCGTGCGGTGAATAATGTGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400041950
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400041950 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G22970.1 |
+2 |
5e-80 |
263 |
182/456 (40%) |
Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370 |
Transcript Sequence (2191 bp)
>PGSC0003DMT400041950 2191 pgsc_dm_v3.4
AGAAAATCATAGACAGTACAATTCACCTTCTTAACTACACCCACTCTATATAAGCTCCTC
AAAACCCACTCTCTCATTTCAACTTAACTTCACAAAAAACCAAAACTGAGATAAAAATAG
AAACAAAGAAGAAATGACATAATCATTTACAAATATAGGCCCACTTTTTCTCTCCTTCAC
ATAATTCTCTCCTTCCCGTGAAAAGGAAAGGTATTCCGGCGACTATTGTTACACTCATTC
TATTCTTGTTCAACTACGCTAACAACTCCGAAGAGTGAAAGGAAGAAAAAGGTATCAAAA
TTTGACAATTTTTATTTTTCTATCACATTTGGAAACGTGAAGATGATAATGGTGAACGGA
TTATGCGCGATTGTATTAATTGGTTTTTGATGTGTGAAAAGGGAAAGGTGAATTAGGTGT
GAATGAATTATGAATTCGCTGAACTTGATTTTCTTTTCAAAGCATTGATTTCTGTGAATT
TGCATGTATTTCTGTGATTAAGAATTTAGGCATTTAAAGGATTCTGATCTAGACACACAA
AGCGAGTAGGTTTTTAAAGCTCTGAGAATTCAGCAGAAAATGACAAAAGAATATAATTAA
GCTGTAGAGAGAGAGAGTTTTACAGTAGAAGAAGTTGTACCTGTTTTGGTTGTGGTTGAT
AGACATGCCTTTTCCGATGAAGGTTCAACCGATCGATTCTTCAACATACAGAGAATCGAT
CAAAAATGATGCAGTAAAGCCTTTGCTGAAATCACGACTTAAAAGGTTCTTTGATCGGCC
GTTCCCTAGTGTTTTACGGATTTCGTCGGCGGCTGAGAAGCCAGGTGCCGCCGGCGCTGC
TAATGATGGACCAGGCGCTGAGTTTGAGCCGAATTCGGTTTCTTTGGACAAATTGGTTCA
GAATTTCATAGAAGAGAACAATGATAAGTCGTCTGCCGCTAGATTTGGCCGTAAATGCAA
TTGCTTTAATGGCAACAACGATAGCTCCGATGATGAGTTTGATTTCGACTCTGTTACCAA
CTCCTCTTCGTTTGGGGATTCTTCCGATACTCTCAAGGTAATAAAATCTCTTGTATATAA
AAAGAATTCTCTAGAATTGCAGTTTATTCCTAATTGAAATCTCATTTTGTCTATATTTGT
TGCAATTCAGAGCTTAATTCCCTGTGCAAGTGTTACCGAGAGGAATCTATTAGCTGAAGC
TTCAAAAATCTTCGAAGAGAACAAATCTTGCAAGCGTAAGGACGATTTGAGAAAAATTGT
CACTGATGAACTTTTAGCACTTGGCTATAAAGCTTCAATCTGCAAATCCAAATGGGAAAA
AGCTTCTTCTACTCCTGCAGGTACATGCTTCGTTCTTCTTATATGAGTTTTTGCTCCGTC
AAATTTTAGTATTTTCGTGCGGTGAATAATGTGCTTTTTTTTCTAAATTTATTCGATATA
TTCAGGTGAATATGAGTATATTGATGTGATAGAGGACGGCGAAAGAGTGATACTCGACGT
AGATTTCAGATCTGAATTTGAAGTAGCGCGATCGACGGGAAGGTATAAATCAATTCTGCA
ATTGCTCCCGTTTATCTTCGTCGGCAAAGCCGATCGGCTTCTGCAAATAGTGTCAATCGT
CTCAGAAGCAGCTCGACAAAGCTTGAAGAAGAAAGGTATGCACATCGCTCCATGGCGCAA
TCCGGAGTATATGAAAGCCAAATGGCTCAGTCCCTATACTAGTCTCGCACCTGCTGTGGA
ATCAAACGCGGCTGCTGAGATCACGGAGTCGGAAAGTGAGTACGGTGAGTTGGACTTGAT
TTTTTCTGATAAAACGCTACCGTTAGACTCCGATCCAACAACAGATCCGTCGGAGAATAC
TTCCGGCGAGGAAGAGAAGCCGGTGATGATGACATGGCAACCTCCGGCAGTGAAGCCAAA
GAAAACCAAAGTGGTTGTCACTGGATTGGCTTCCCTTCTCAGGGAAAAACCCTAAAAGAT
TTTGTTAATTCTAACATTGTGAATCTTTTGTTTTGTTTAGCGAGTAATCGGAAATTTAGA
TAGATGAACGGAAACTGTTTTTTTCATTTTCCGTTCCGTTTTCTGCTCCTCTTTGAAAGG
GACAAAGGGTACTGTAATAGAATCTAGAACCAACCTCTTTGCTGTAATGAAAAAGTAAAG
AATAAAGAAAATATTATTCTTAATATTTTAC