Microarray Probes on PGSC0003DMT400041560
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_52447_PI426222305 |
JHI_St_60k_v1 |
GAAATGAGTCTTGCAATGCGTGGTCTATCATATTCATCTGCAATGTTATTAGAGTACTAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400041560
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400041560 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G19160.2 |
+1 |
8e-57 |
205 |
130/291 (45%) |
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10477772-10479947 FORWARD LENGTH=453 |
Transcript Sequence (3403 bp)
>PGSC0003DMT400041560 3403 pgsc_dm_v3.4
GTTGATTGATAGGTTGTAACTTGTAAGTTTCATTATTACTTGGTTGTTTATTAGAAGAAC
AAGCATTTTGTGTTGCTAGTACTAGGTAAATTCCCAGACCCTTTATTCTTTACGATCATC
AGGTGTGGTTTTGATGGTCGTGTTGGATGTTGGATTGGGAATGAGAAAGGAAGATGGAAC
AAATTGGCTGCTGCAAGTACAATGGCACCAAAGAAGAGGAGGTTGAGCATTTCCCCTCTG
GCTTCCTCTGCTCTAGCAGAAACCCCATATACATCTAGAGCCGAATTCTATCACGAGGTT
CTTAACGATGCTAGAGAAAAATTTACCCAGGAGATATCTTTCCAATCCAAGGACAAAGAT
ATTTCTTTGGCAAAGGCTTTGCTTTACGTGGCCTCTGAAGACGAGGCATTTATGGCTTTC
AACCGGGAGATGGATGCTCATTCACTCCAAATTGAGAGGAGTTCAGCTTCATTGGCTTCT
CATGCCACAGATTGGACTTGCGTGGAGGCCATGCCTCTTGCTGGAAAAAATATGAATGAA
TGGATGGTTGAGTTGGATGTTATTGCGAGAGAAGTGGAGGCGGAGCTAGTTTCAAGAGAA
ATAGGATGCGATTTGGTTGAAGTTTTAGATGCCGTGAATATGGTGCTTTTCAAGTCAAGG
GGTTTCAAAAGGTCACCTGTACTTGTGGATTCAAAGTGTGCATACCTGCATTCAGTATTA
AGCTCTGGATATTGTAGTGGTATATTTTCTTGTTCCCTCCCCGCTATCATCATTATTTTG
CATATGTACGAAATCCTGCAACCTCAAAATTCTTGTTGACCGCTGATAATACGATCTGAC
GTAGTGCTTACTTTCTTTACAGCAATTTTGCTTAGTGTCATTTATATTGAAGTCTGTCGA
AGACTTAATCTGACCATTGTGGGATCCCGAGTTGGGGAAGATTTTTTGATATGGCCTCAA
ACTGGAAACCCTGAGGTGTGTTGTTCTGAACTCATAGATGATGTCAACATCTGACTTTGT
TCGTCCATCCTGTACCATTTTACTTCCTTTATATTCTATTCCTTCAGAAGTTTGTAATGC
ATGGTATTAATGCCCAATAATCTCATTGAATTTGAATTGTTTTGTTACTCTTATAGGAGC
TATTCAAGGTTATCTCTGGTTATAGCTTGTTTGGTATTGTTAATGGGAAGTGTGTCGATG
ACCCTAGAGCAAAGGCTTCTGACATCAATAGCAATTCTTTGCCGGGGCTTGAGTTAGCAA
CAAACCGAGATATTATTGGAATTGCTTTGGCTAATTTGATGAGGCTTCACTGGAAACGTG
CTTCAAGAGCAAATCATGGTTTGATGCTGACTTCTCCGCTTAGATCTGTTGATCATGCAG
ATGATAAGTCTAGCAAGACTAATTGTCTGAATGTCCCATTGTTGCGGCCTCAAGATTTGA
GGTAACAATCTTATCCTTTCTTGTTTTCTTTTTACAACTTTTGGGTCTCGTTCCTGATTA
AGCAGGCGCCACTTTCTCTTGTCCCTACAGGTTCAAGATGCTAAATTGCAACCTTTGGCA
TGAGAAAAGGAGAATTGAGAATATTGGACGCATATTGTTATTTTATTGATTCTGACATAC
TACTAAAACTCTTAACATTCCACTAAAATAACCACTTAATCAATCTTGCTGCGATATAAT
AGATGCTTATACCTCCATTTAAGTTTATAACATAACGAACTATAGGGTAAAAGATTCCTC
ACTGATCTAGCTTCATATTGGTATTAAAAGCCCTTTCTATTTCAATATACTGATCAAATT
GAAAATGACTAGATACTGCATTATGCAGATAGATTGACTTTCTTTTTACATACTTTTAGC
CTCTTCGCCCTCTTACTCCTTTAATGTTGTTTCTCTTCACCTCTCCGACATTCCTTTTAG
AAATCCAAGAAAGCTAACCTTATCTTTCTCCCTTTCTGATCTTTAGGATTTGATGCTCTT
TTTAGATACTGTAGATACAAAATATACCATGTTTGGATGCATTTATTATATTTGATAGTT
GAGGCCAACTATTCGGGGTTTTTTGTTCCACCAAATCTATTAGTTTTTCTTACAAAATCA
AGTCAATTCTCCTAACCAAATGTTGTTAAACAGGCAAATATGCTTGCCTGATGATCAACC
ATTAATTACTTAGAAAAGGAAGTGGTATGCTGGGGGTGGGGGTGGGGTGTTACAGAAGTA
ACAATGATACCTCATCCACTGTCACATAGAAATGCATGATGGTCTTTTTGCATCTACATT
CTCTTTTAGGGGACCATCTGTTTCTGTTTAGAGATATCCATTCAGCACTCTTTCCTGCTT
TTTTTCCGTTGTGCATAATATTGAGGTGGTAATAATTGGTACCTGTTATTTCTTCGTTGT
ATATCAAGTAACAATGAAGTAGGAATTGAATCATTTGCCAAATTGCAGTACACACATGGG
ACATATAGAGTTTTTAAGCTATCAAATAGGGCCATAACACTACTTGGCATTTAATGATTG
TCTTTTAAGCATTATGTTTTATCTAACGTGCAGAACCATGCTAGTCTCGAGTAAGGATGG
ATCATTTTCCATCTTACTATTCTCGATGATAAGCAAAACGATCCAAGATTTGTGTATTTT
CTTAACTAATTGCAGGTGTTGTGCTTAAATTAAGGTTTTTCTGGTTATCACTCAGAGATT
TCTGACCTTTGCATTAGGTCATTAACTTGTATCTGTATGTAATATCTGTTCACTTATAAT
GACATTATGTCTCTCTCTGGAATGACACAATACTTTCTAGGCTGGCCATTATGGCTTCAG
AAAGATTGCTCATTCTGCAGCCACACAATTGGGCTCTGAGGAGAGACCATGGAATGATGT
TGTACTATAGTAGGTATGCCTTATCTGAAATTTCCTTCTTCTTTCTCATTTTCGACATGC
TTTCACGGAACAGACTGTTGTTTTGACATATAAATAACATGCATCAGGGAATATGAAGAG
GCAGTTCAGGAGCTTAGCATTTGCATGGCCTTTGCCCCAGAAGAAGAAGCAGAAGTTTTG
GAACCATTTGTTGAGAAGCTACACTTGTTGCGAGTCGAATCGTCTTGGAAGTCTCAGGGA
AAGAAAGGCCATTTAACAGTTTCTTGAACTGTTTCTGGTTTGTAGAGCCATTGAGCTTGT
ATTAAGAGCACAACCAGTAGAACTTTAGCTGCAATATCTTTTTTTTGGGCCTTGTGTACA
TATTTTCCTTCAACCAGAGGCTAAATTTGCATCCTTTCTATAATGAGATGAATAACATAA
GTACTTAATGGAAAAATCTTCTTGACGCTTCTAGAAATGAGTCTTGCAATGCGTGGTCTA
TCATATTCATCTGCAATGTTATTAGAGTACTATTTTTTTTTTT
