Microarray Probes on PGSC0003DMT400040864
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_27112_PI426222305 |
JHI_St_60k_v1 |
CTTCCTAAGGCCTTTAAGATATACTACTGTGGCCGCAACTTAAAAGATTGATTAATGTAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400040864
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400040864 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G52420.1 |
+1 |
2e-67 |
216 |
100/192 (52%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21281817-21282545 FORWARD LENGTH=242 |
Transcript Sequence (1143 bp)
>PGSC0003DMT400040864 1143 pgsc_dm_v3.4
GTGCCTAATTCCCTATATTCAAACAAATGAATATTGAAAAGGAGAAATAACATTGAAAAA
AATAAGCCCAAAAAATAATAATAAAGCTCCAGCCCAAAAATATTGAGCCCATCTCAGCCT
AGCTATTTGATTTTCTAAATGAAGAAAAGAAAAAAAAGTGTTGCCGTGCGGAATCGAACC
CAAGGCATCCAGGCAAATTCTTGAACACCCTTAACCACTGAGCCAGCCTCTTTACTTATA
TTAAGGGGGTTCATTTTAATATATATACACATGGAAACAGAATTTGACCTTATATATACA
GTGTAATTTTCCGACGAAGGGGGTTCGGGTGAACCCCCTTGCCACCATGTAGATCCGCCC
CTGGGTCCATGTAGTGACATTCTTAAAGATGAAAACTCTGAACAAATCATGAACAACTCC
CAGAAAAAACCACAACAACAACAACAAAACAGAAGATTTTTCACTTTTCGACAGCTCAAC
GTCCTCGCCATCATAATCATCTTTTCTTCAAGTGGCATGGTGAGTCTTGAAGATTTCGCC
TTCGTTCTATTCTCCCTAATTTACATCTACTTCATCTCCAAAATTGCCTTTCCCCCAATT
TCTCCGAAAACAGAGCAGCCCCCAGTTTTCGGCGAAAAAAACAGAGTATTAAATCTCTAC
GTCTCAATTGGAGCTCTGGTTGGATTATTCCTCCCAATACTTTATATTTTCGAAGGAATT
TACGAGGGCGATAAAGAAGGTATCAAAGCAGCGGCCCCACATGTTTTCTTGCTGGCTAGT
CAAGTTTTCATGGAAGGGTTGACGTTTACTGATCAATTTTCGCTGCCTATAAGAGTTTTT
GTTCCAGTTTTTTACAATTCGAGGAGGATTTTTACGATTATGGAGTGGTTGAAGACTGAA
ATATCAAAAGTGGATGAAGAATATGGAGGAAATGTGAGGAGGGTGTATATGGGTAGAGGA
TTAGCTGCTGCTAATATGGTGTTTTGGTGTTTTAATTTGTTTTGTTTTTTGTTGCCTGTG
TATCTTCCTAAGGCCTTTAAGATATACTACTGTGGCCGCAACTTAAAAGATTGATTAATG
TATAATTTTTTGTTTTCATTAGTTTTAGTATGTTATATTAATGGTGACATATAAATGGAT
TTG
