Microarray Probes on PGSC0003DMT400040808
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_3495_PI426222305 |
JHI_St_60k_v1 |
AATCTTGGCTCTAAGAAAAATGATGAAAAAAGGCCTCAAGACCTGCCTCATTCTACCAAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400040808
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400040808 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G66800.1 |
+1 |
2e-19 |
85 |
50/99 (51%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26671433-26672116 FORWARD LENGTH=183 |
Transcript Sequence (958 bp)
>PGSC0003DMT400040808 958 pgsc_dm_v3.4
GCGAGAAAGAGGGTCCCCTTAGGAAGCAACAATTGGCAGTAGTGAGAGGGTTGTGGCCAA
GGCTGGTTGGGCTCTTATTTTGCAAAAATACCAACTCACACACACTACTCACTATGTTAT
GTTTTGTTTGAGAGTAAATAGTCACTCTTCTTCATGGCATGCTTAGAAATGTACAACAAA
AATAACTCATCTACTGACCAAAACAACAACAAACTTTATTCAATGAGTCCTAGAATCTCC
TTCTCAACTGACTTCATTGATTCTTCAACTAATTCTTCTCAACACTTGATAAAAAATGAG
AGGAGGGATTCCCCTGTTTCCTCTGACTTTGAATTCTCCGTCACTAATTATAGCATGCTT
ACTGCTGATGAACTTTTCTCTAAAGGCAGATTGTTGCCTTTTAAAGACACTCACAAAACT
ACTACTACTATTCGAGATGAACTTCTCAATGACGACAACGATGATGATTTTACTTTGAGG
ATACCCAAAAGTTCTACTAGGTGGAAAGGTTTATTAGGCCTCAAAAAATCTAATCTTGGC
TCTAAGAAAAATGATGAAAAAAGGCCTCAAGACCTGCCTCATTCTACCAAGCAAGTGTAC
AATGGGTCTGGTAGTGGAACAGATATGGACTTTCGTTTTAATTGAAACTACAAGGTATTT
TGGGGGATGGCTTCTATGTTTTTTTGTTTTTTTTAAGTTTGGGAGAATTGAATCAACATA
GATTCTGATTTGTTTTGTGTACAAGTGTTTGGAGTTCAATTCTTATCATTTTCTACTAGT
ACTATCTTTTAGAGCTATTGTGTTCTTTTTTTTGTATTGAATCATCAATTGTTAAATATG
TACAATTTGGGAGACCATTGTTGGAATATCTCTAGCTCGTATAATTTCTCAGATGAAATG
ACAGCTATAAGGGACATTTCGACTATAAAAATGATTGAGAAGGCGACCAGGATGAGCA
