Microarray Probes on PGSC0003DMT400040422
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1568_PI426222305 |
JHI_St_60k_v1 |
AATTCAATCTTATTTAGGCAATGGAGTTCTCCCTCACTTTCCCTATAGTCTAAAAATTGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400040422
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400040422 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc06g051130.1 |
+3 |
0.0 |
781 |
407/427 (95%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch06 gene_region:30740803-30742107 transcript_region:SL2.50ch06:30740803..30742107- go_terms:GO:0016740 functional_description:Transferase family protein (AHRD V1 **-* D7LEH4_ARALY); contains Interpro domain(s) IPR003480 Transferase |
| TAIR PP10 |
AT2G40230.1 |
+3 |
1e-168 |
490 |
274/430 (64%) |
HXXXD-type acyl-transferase family protein | chr2:16803285-16804586 REVERSE LENGTH=433 |
Transcript Sequence (1750 bp)
>PGSC0003DMT400040422 1750 pgsc_dm_v3.4
ATTTGAAGGGAGGTAATATCCTCCTTTAAAAATAACAAGGTACAAACCCACGCCCTCCCT
TTAACCCACTACTGGGCCAGAAAAGACCGTACACGTTGTATCACTATATATACTCCCAAA
CTCTTTATTAGATATAGTTGTAGCTTTATATGCACATATTTCTTCATCACAAGTTAGATG
CCAAAATGTCAAGCTCTGTTCTTGTAAAGGAAGCTATTTTAATCACCCCTTCAGAGCCAA
CCCCTATACAAGTTCTCCCACTTTCCGCTTTGGATTCTCAGCTGTTTTTGCGCTTCACCA
TCGAATATTTGCTAGTTTACAAGCCCTCACGCCATGTATTAGATAAACCAGCTGCAGTGA
ACCGTATCAAAGCCGCACTTGGTCGAGCCCTGGTCCCTTACTACCCCTTAGCCGGAAGAG
TCAGGGCTCGAACAAACGGCTCAGCAGGCCTTGAAGTGGTCTGCAGAGCACAGGGTGCGG
CCTTCATACAAGCCGCCTCCGATCTCACGGCGAAAGAATTTGAAGGAGCTCCCCGGCATA
ACACGCAGTGGCGGAAGCTGTTGTCGTTACAAGTAACCGACGTCCTTAAAGGGGCTCCGC
CATTAGTTGTCCAGCTGACGTGGCTTTCCGATGGATCGGCGACGTTAGGCGTTGGATTTA
ATCATTGTCTTTGTGATGGAATTGGTAGTGCTGAGTTCCTCAACTTGTTCGCTGAATTAG
CTACTGGTAAGCAAAAATTCACTGAATTAAAGCGTCAAGTATGGAATCGTTATCTGATGG
ATCCAAACATTTATAATAAGCGCATTTATCAACAAAATCATCCCGAGTTTAAGAAAGTAC
CTGATCTTTGTAACTTTGATTCTCAATTTTCTCAACTCGCACCTACTTCAGTTACATTCA
ACAGGAGCAGAGTAAACGAATTGAAGAAATTATTAACATACAGCCAATCCTCTTGCACTT
CGTTTGAAGTACTCTCTGCTCATATATGGAGGAGTTGGGCCACATCATTAAATTTACCAC
CCAACCAAACATTAAAATTATTATTTACCATCAACATACGGAATCGAGTGCAGCCAAGCT
TGCCCATCGGTTACTACGGTAACGGATTCGTCTTAGGATGCGCTCAATCTTCTGCTAGAG
ATTTAGTTGAAAAGGGATTGGGATACGCAGTTGGATTAGTGAAAAGAGCAAAAGAGCGAG
TAGACGATGAGTACGTTAGAGAAGTGGTGGAATCAGTGAGTTCAAATGGAACGAGTCCAG
ACTCAGTAGGTGTGTTAATAATGTCACAATGGTCAAAACTGGGATTAGAGAAAGTTGACA
TAGGAATGGGGAGGCCTGTTGAAGTAGGGCCAGTTTGTTGTGATAGGTACTGTATATTAT
TGCCAGTGTATGATCAGAAGGATTCTGTGAAGGTAAATGTTGCGGTCCCTACAAGTGCGG
TTGACAAATACTTGTATCTTTTAAACACTACCACCACCATTGGCACCTGACAAACAAGAT
TTGACGGACGATATTCAATTTCATGACTTGATTACACTTTATATATGAAGGAGTACCTCT
TCTTTTTTTCGAATTTAATGAGTACTAACATATATATGTTGACTTCATGTACATCGATCG
ATCAATCCACGGAGGAAAAAAAATGAGTAAAAGATGAATTTGTTGACTTTGTAATTCTTT
TGCTTCGTATAATTCAATCTTATTTAGGCAATGGAGTTCTCCCTCACTTTCCCTATAGTC
TAAAAATTGC
