Microarray Probes on PGSC0003DMT400039510
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22420_PI426222305 |
JHI_St_60k_v1 |
CTTGGCTTTGTCGTGAATTTCATTTACATATAGAACCGTTGAGAAGGCAGCAAGATTTAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400039510
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400039510 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G73350.2 |
+1 |
6e-24 |
96 |
76/92 (83%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:27575683-27577126 REVERSE LENGTH=210 |
Transcript Sequence (612 bp)
>PGSC0003DMT400039510 612 pgsc_dm_v3.4
ATGGCCGGAAGAGAAGTTCGAGAATATACAAATCTCACCGATCCTAAAGATAAGAAATGG
GGTAAAGGTAAGGATAAAATTGATGACGAAGAAATCGCTTTCCACCGCATGGTTTCCAAG
ATGCAAGATGTTACTGGGGAACGTGGAGGTTACCTTCATGGAAGAGGCGCCCTGGACAGT
GATGACTTGCTCTATCTTAAGGAACAGATGGAAGCTGAGGAGGATGCAGAACGTCTTCTG
CGTCGTACTGAAAAACGTGCATTCCAAGCATTTAAGATATCCTTTTATTTGTTTTCTTGG
ATCATATCTCGTCTTGCATGTGTATCGTTTGCTTCTTGGCTTTGTCGTGAATTTCATTTA
CATATAGAACCGTTGAGAAGGCAGCAAGATTTACTAAAACGAGTTGTAGAAGTCAAATCC
AAGAAGCCAAAAGTTTCTAATTCCCCTGTACTTCCAAGTACACGGGCTATGCCAAGTGGC
AAGTCTGGTGCTGATAATGAGGAGATAGAAACTTTGCCGGTCAGGTCAAGTGAAGCTGGT
GATAGAAAGATAGATAATCCAGTAAAAAGCTTGCTTTCAGTATATGACAGTTCTGATGAT
GATGATGACTGA
