Microarray Probes on PGSC0003DMT400037756
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11013_PI426222305 |
JHI_St_60k_v1 |
ACCCGCACAAACTTCAACCCGCCCGCACAATTTTACTTTGTTAGATTGTAATTTGTAATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400037756
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400037756 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G29180.1 |
+3 |
5e-14 |
68 |
55/100 (55%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:12543081-12543702 FORWARD LENGTH=169 |
Transcript Sequence (798 bp)
>PGSC0003DMT400037756 798 pgsc_dm_v3.4
CAAAAATTAAGATGACATTTCCTTTAGCTTTGCAAATTGGATGAGAGACAATGGCTTCTT
CTACATCCATTTCTCTCTCCTTCCTTGTAATTAACCCTAAATCACCTCTTTTTCCTCCAC
AAAATCTATCAATTTCACAAATTTCACCCTCTAGAAACCTCCATCCTCACAAGATTCACC
GCCCAAATCTACCAATTCCATCCAAAATCATCCCAAATCGGAGAATCTCCGCTATTTCAG
AGTTGTCAGAAGTGAATCTCGATGAAACTGCCGATCAAATTGTTTCATCCACCGGTGGCG
ACGGAGTTTCCACCGTCATTCAATCGCTTTTGGTCATTGCTTTCGCCGGATTATCCATTC
TAACCGTCGGAGTAATCTACATTGCTGTTACGGATTTTTTGCAGAAGAGAGAGAAGGAGA
AATTCGAGAAAGAAGAAGCGGCGAAGAAGAAGAAGAGCGGCCGGAAGGGGAAAATTGTAG
CGAGAGCTAGAGGTGGACCTCGAGGATTCGGGCAGAAGGTTGAGGAAGCTGAAGATGATT
AGGGATGACAATGGGGCGGGATCGAAGAGGTTATGGTGCGGGTTTAGTTTGAACCCGCAC
AAACTTCAACCCGCCCGCACAATTTTACTTTGTTAGATTGTAATTTGTAATATTTTTTTA
CAGTACGACTACTAAGTAAGTAGTAGTAAAATTTATTAGTGAAAAAAAAGAAGAAGCTAG
CATGTGCAATCATTTGAGTTGATAATATTTACGTGCATTTTCTATTCATATTCATAATAA
ATAGAGCGCAAAGAGAAA
