Microarray Probes on PGSC0003DMT400037741
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11129_PI426222305 |
JHI_St_60k_v1 |
TGTATACTCTCTTCATCATCCACTTACCATCGAAAGTTATGTTTAGTGGATCTTGAGCCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400037741
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400037741 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G08720.1 |
+2 |
0.0 |
553 |
284/401 (71%) |
CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2841536-2845335 REVERSE LENGTH=719 |
Transcript Sequence (1464 bp)
>PGSC0003DMT400037741 1464 pgsc_dm_v3.4
ATAATTTTCAATTTTAACCCAAAGTTCTTCACTTTCACTTCACTCTATGTATTCTCTGCA
TTTCCATTTCACAATCAGACCAAAAAACTATGAAATCAACAACAAATTTTCATCAATTTG
TTCATGGAAATCGAGTTTCTCGTCTTTGGAATACGTTAAATTCAATTCGAAGAATGAGAA
TTTTAAAACTTATTATTATAGAAAAGGGGATTTTTTAGGAGGAGATGCAATGGGAGTAGA
GAAAAATGTTGGATGTGAAGTGGAAGTTGTTTCGTGGAGAGAACGAAAGATTAAAGCTGA
GATTTTGGTGAATGCTGATGTTGATTCTGTTTGGAATGCTCTTACTGATTATGAAAGGCT
CGCTGATTTTGTCCCAAATCTTGTTAGCAGTAGGAGAATTCCTTGTCCACATCCTGGACG
TATTTGGTTGGAGCAAAGAGGTATCCAACGATCACTCTATTGGCACATAGAAGCTCGTGT
TGTATTGGATCTCCAAGAATTCATCAAATCGAATAATGTTCGCGAGCTCCATTTTTCTAT
GGTTGACGGTGACTTCAAGAAGTTTGAAGGCAAATGGTCTGTGAGAGTCGGAACAAGGTC
TTCAACAGCTATACTAAGTTATGAAGTTAGTGTCATACCAAGGTTCAACTTTCCTGCCAT
TTTCTTGGAGAGGATTATCAGGTCAGACCTCCCGGTAAATCTTCAAGCGTTGTCCTGTAG
AGCTGAAAACAGTTATCAAGGTTATCAGAGTGTTACCAAAGAGGAACCTGGTTCTTACCT
TATTTCCACTAAGACAGATATTGATCATGTCATTTCCCACGAAAATAAATCTTCCGGTGA
ACACTTAAAGGACAAGTTTGTCAAAGCCACTTTTGGCCCATCGACACCAGTTACAAGTGA
TGTGAGTAACAATTGGGGAATATTTGGGAAAACTTGCAAACTTGACAAGCCATGTGTGGT
GGATGAAGTCCATCTCCGAAGATTTGATGGTCTACTGGAAAATGGAGGTGTTCATCGTTG
CGTTGTTGCTAGTATTACAGTAAAAGCTCCAGTTCGCGAAGTATGGAATGTTTTGACTGC
TTATGAAAGTCTTCCTGAGATAGTTCCAAATTTAGCAATCAGTAAGATCTTATCACGAGA
CAACAACAAAGTTCGCATTCTTCAGGAAGGATGCAAGGGTCTTCTATACATGGTACTCCA
TGCACGTGTCGTCCTAGACTTATCTGAACTCATAGTACAAGAAATTAGCTTTGAGCAGGT
GGAAGGAGATTTCGATTCTTTTGAAGGAAAATGGATCTTAGAGCAATTAGGCAGTCATCA
TACTCTATTGAAGTATAGTGTGGAGTCAAAAATGCACAAGAATTCATTTCTTTCCGAAGC
AATTATGGAAGAGGTTTGTATCCATGTATACTCTCTTCATCATCCACTTACCATCGAAAG
TTATGTTTAGTGGATCTTGAGCCT
