Microarray Probes on PGSC0003DMT400037014
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_26366_PI426222305 |
JHI_St_60k_v1 |
AAAGATATTTTTCGCTCGGCCTCCGCTTTGCTGTTGCAGTTAGGGTTTCTTCAAGACAAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400037014
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400037014 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G52040.2 |
+1 |
2e-71 |
243 |
164/332 (49%) |
RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=357 |
Transcript Sequence (2985 bp)
>PGSC0003DMT400037014 2985 pgsc_dm_v3.4
CTTATAATAAAACCTGACTTTTCAAAGATATTTTTCGCTCGGCCTCCGCTTTGCTGTTGC
AGTTAGGGTTTCTTCAAGACAAGGTTTAGCAGTCCCTGACATCTTCTGTTCAGGAAGGAT
GAGGCCAATTTTCTGTGGTAACTTTGAGTTTGAAACCAGACAGCCTGAGCTGGAAAAGGT
TTTCAAAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGTAAGATTGTAACACA
TGTCAATTTTCTTTCAGTGCCACCTGTCTTATTTCTAACCTTGTTGTGTTAATTTTCCTT
TTTTGAATATGATGGACCCTGTTGGCGAGTTTATTGTGGCGATAACTTGTTACGGACACA
AACCCCTGGATTCATGGTGTACCATACTTGATATAAAATTATATGTACTTGATTAATTGG
GTGTCTTGTTAGGTGTTAACTACTTGTATGTGAGGCCTCCCCAATGAGGTCTTGTTATTT
TCTTTTGTGTATCTTAGAAATTGGAAATGTAATTCTCATTTCTTAGTACATGCACATCTT
ACTGCCAGTGAGTTTCTTCCTGCAGTAGGTACCTGGGTGTGATTTCATCTACTAGGGTAG
TTGTTTACATAACTGGATTCTTTCTTCTGTATAATCTTTATTCCTTATGTCTTGTTAACT
ATGGGCAATAAGCACTATGGCATCAAATGGTCTGGCCAAGTGCTATTTTGCCAATTGTTC
ATCAATTATATACATACTGCTAAACAAAGTTCTCTGCAATCCGAGTAAGACGGAGCCCAC
CACTATTGACTACCAGTAAAACTGGGCCAGATTATGTGAAGTCTGTGTCTTGCTAAAGTT
CAGCATAGCAAGCAACAATAAAGCTGATGGTTGCAAAGCGATTGAGTGATGAAATATGAA
CAAGGTTATTGCATCCCTTGGCCCGTTCTGTGTTTTCAGTGCTCAAATGACCGCAAAGTG
GTTTGATGTGGATGCTGCATTCCCATCTTTACATTGTGGCTTTGTTGGATGGGAGATCCA
GTCAAGCTTATTTGGCTCAACAGCAGAAGTCTTGTTGAGTTTTGGTGGGGTATTAGGATA
TGTTTACCGAAAAAGTGTATTTTTTTAAGCGTAGACCCCCATACTCAACTGATTCTTTGG
CGCAGGATAACATTGCAATGCCCATACCCATTGCTGATGGACGGTGTCTATTTCGTGTCC
TGACCGTGACAAGTTTCTCTTCTTGTTTCAACAAGAGCTCTCTGATCCATCATGGCATCA
CAATCACATATTATTCTCAGTCACTATTGCCCTCCATTCCTCGTGAATTTTGCCCCGTCT
TCATTTTCAGACTTGTCACAATGCCGGCCTCGAAGCTGAGGCAGCAGTTTAAAATGGAGA
AGGCACTCTTTTACATTATCCCATCATGTGACATCCACCTTTCCCTGGCATCTTTAGTCC
ACCACTGAAGGTTTTGCTTTTGTTTATATGGATGATGAAAGAGATGCAGAGGATGCTATT
CAGGGGCTTGACCGAATAGAATTTGGCAGAAAGGGACGGAGGCTTCGTGTTGAGTGGTCT
AAGGAAGAACGGAGCAGGAAGCCTGAGGGTTCTAAAAAATCTTCATCGAGCTTCAGAGTT
TCCAAGACCTTGTTTGTCATAAATTTTGATCCATATAATACTAGGACAAGGGATCTGGAA
AGGCACTTTGATCCATATGGAAAAATACTCAATATAAGGATCCGAAGGAATTTTGGATTT
ATTCAATTTGAATCACAGGAGGATGCCACTAGAGCCCTGGATGCTACAAATATGAGTAAG
CTGATGGACCGAGTTATCACAGTGGAGTATGCAATCAAAGATGATGATGATAGGAAAAAT
GGATATGGTCCTGGTAAAACCTATAATCAATCACCCAGGAGAGGTTATGACCGAGGCCGA
TCTCGTAGTCCACGTGGAAGAGATAGGCTGAGTCCAGACTATGGTCGTGGCCGAGATCGG
CCTAGTCCAGACTATGGTCGTGGTCGAGATCGGCCAAGTCCGGACTCTGGTCGTGGTCGA
GATCGGCCAAGTCCTGACTATGGTCGTGGTCGAGATAGGCCTATTCCTGACTTTGGTCGT
GGTAGAGATCGGCCAAGTGCTGACTTTGGTCGTGGTAGAGATCGGCTAAGTCCTGATTAT
GGTCGTGGCCCTAGTCGAAGTCCTAAGCACAGGGAAAGGAATTCTGAGTATGGCCGTGGC
CATAGTCCAGTTGTAGGAAAGGAGAGAAATCCTGGTCATGGGAATGTTCGTAGCCCTAGC
CCTCGTAGGGAAAGAACAGGTCCAGGAAATGGTCTTATGAGCAGTCCGCTGAAAAACAGA
AGTCCTGGTTATGGTGATAGACCCGGTCCTAGTCCTCAAAGGGAGAGAAGAGATAAATAT
AGCCTGGATGGTTATAATCGTGGCAGCAGCCCAGGTCCTAAACTTGAACCAGTAGGAAGT
CCTGTACGTGATGGGAGGGGAAATTCGGAGCGATGCAGGAGGTTTGCACCTCACTAGTTT
ACTTTCCCTTTGTCTGGCCTTTTCTTTTTGGTGTCTCTGTGCTCTGTTGCCAGTTGTCAT
TTTTGATGTCATCCTAGACGTGTTGTACTTTAAAATCATTTTGTTGGTGTTGCAGTCGTT
CACCTCCAGCTCGGGAAAGATCGCGCTCCTGATTTGCTTGAAGCTGTTTTGATACTTGGA
GTAATATCTGTAGAATGGTTATGTTGAAAGTGGTGCTTGTAGAATTACACCTTGAAGTTG
CTGGAACATCAAAGTAGCATGTGGGTTTTAGAACCAATGTAATATACCTTGGGAGATAGT
TTTTGCTGTTGGAAGTGATTTAGAACTGCTACCGTGTATCTGCCTTGTTTACTGGATACT
CTCTTTTCCATTTGATACTGATCTGGTAAGACTTGGGCCATATCATTCTTAGCTTGGCTT
TACCAACAAATTTTATTTATCCCCGCAGCCTCAGTGTGATGATTA
