Microarray Probes on PGSC0003DMT400036860
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_6323_PI426222305 |
JHI_St_60k_v1 |
CGTGCAATAGACAGTATTCTTCAAGCGCTCCGAATAGTTTTTTAATGACATTTACTTCAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400036860
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400036860 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G24100.1 |
+1 |
6e-80 |
269 |
148/240 (62%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466 |
Transcript Sequence (2758 bp)
>PGSC0003DMT400036860 2758 pgsc_dm_v3.4
AGGAAGTAGTAAAAACGAATATTGATTTCTCTTCTCCTCTTGTTCATATTCATATACAAC
AAGCTTTTAGATATTTTGGACCAACTCTTTGGGTTTTCAACTATGGTTCAATTGATGAGA
ACAACCATGGAAGAGTCGCCGGAGTTGCAGTGGCATAAAGGGAAGAACGCGGCGGTGAAG
CTCGAATTTGAAGATGCTTTAGATGAAGCATACGGTCCACTCAACAAGCGATCTAAACTT
TCCTCTTCTTCTCTACAACAATTGGTTGTAGGAGCTGATGGTTTTCCAGTAGCGCCTTCG
CAGTATAACCCGCTTGATGAGCCCAGTCCGTTGGGTTTGAGGCTAAGGAAGAGCCCATCA
CTGTTGGATTTGATCCAGATGAAGCTTTCTCAGGGGAACAACGCCAAGGTGGGAAATCAA
GGGAAGGAGCAGAAGGGGAACTCTGGAACAATTGAAAAACTCAAGGCTTCGAACTTTCCT
GCCACAGTTCTGAGAATTGGGAGCTGGGAGTACAAGTCAAGATATGAAGGGGATCTAGTG
GCAAAATGTTACTTTGCGAAGCATAAACTTGTTTGGGAAGTCCTTGACGGTGGTCTCAAG
AATAAGATCGAAATCCAGTGGTCAGATATTATGGGTTTGAAGGCAAATTACCCTGATGAT
GGACCTGGAACTTTAGATGTAGTGCTTTCAAGACAACCTCTTTTCTTCAGGGAGACGAAT
CCACAACCTAGGAAGCACACTCTTTGGCAAGCAACATCTGATTTTACTGGAGGACAAGCT
AGCATGCAAAAGTATGTTTCTTGTCTTATTTTTACTTGTTCGTAATTGGTCTTTGCTCTG
TTTATGGGGATGCCAATTCCCTAAGTACTCATCTGTTGCCATTTTTTAATAGCCGTGGTG
TACGGCCTTCTTGCTACCTCCCAGGCCCCCATCAAGTGCTCATCTGCTGCCTAAAATATA
ATTATGGTGTCCGGGTTGCTTGATACTTCCCACCAACTCTGTCCCCAAGACTTGGACAAA
TAGGAAGAAATTACCTAGTGTTTTTGCCTCAACTTGGATTTAAATCTGATTCCTCGTGAT
TTCCAACCCTCTTCATACACTAGACCACACCCTTGCCTACCTAATCTTTTGCTTATTCTA
CCCGTTTGTTAGAAGTGTCAAGATTGAAAAAAGGTAATATATTTTCTCCAATATTTGATG
TTGGCTAAAGTGAATTCAATGAGACTGAAAGGTAATATATTTTCTCAAATATTTGATGGT
TTAGGGTCCCCTTTCTGTAAAAACAAAATAATAAATTGGTCTTGGAATCCGAATCCGCCC
GCCCTCCTTGAGGTCGGGATAAACCTCAGCTGCAGCCCCTTCACCCCCAATTTTCGAGGC
AGCAGTAGTCCAGATTGGCTTTATGTCATTTACTTTTAAGTAGTTGTGTGAACTTGACAT
AATGGTACTGCTGTTTTTATGCATGCTTAATAAGGTGTTAGACCTATTTATGCTCGCAGG
TCTTGCTTTTCCTTGATTATTATGTCGATATGGTTCAGTTTGATGTTAAAACTCTCCTCC
CTTTTTAATTGTTTTTTGTTTGTTTGTAGGCGACATTACTTACAGATTCCACAAGGCTTG
TTAGGAAAGCATTTTGAAAAGCTTATTCAGTGTGATCCCCGTCTTAATTTCCTAAGTCAA
CAACCAGAGATTACACTAGATTCTCCACATTTTGAATCCAGAATTTCAGTATTTGAAGAC
CCAAATGTGTCTGAGTCGGAATTTAATCTGAATAATGAGAGAAGTCCCCCCTTTCTCAAC
TTGCATGGTGCCGCTTCACCTTCAGGAGCTCATTGTTCTTCTTCAAACGGAGAGCAAGAC
TTTTTTGTTAGTAGACGATTGGAAAACATTCGTCCAGAAACACCTTCACCAAGCTCAGTG
ATGGATACAAGGGAAATTCAAGATGTCAGTAGAGATATGGAGCAATTGAAAGGCCTCGGC
AACCTAGATCAGATCCGAGTGCCTGGTCTTCATCCTTCCATGTCAATGAAAGATTTAGTG
AGCCACTTTGAACAACGTTTTTCTGAGCAGGGAACGTCCGAAGTTATATGCCTGTCCAGT
GATGAACGCCAAAGCTTGGAGATTCTGGAAGAGATCTCGAGGTGCTTGTTTAGTGATACT
CAAAATATGCCAGCATCAGATGAGAAATCCCTCATGACAAGGGTCAATTCTCTGTGCTGT
CTTCTTCAGAAGGATCCCGCAACAGCTCATAAGAGTGAGAATTATGATGATGTTGCAGTT
GGAGGTAAGAGAACTGATGAACTGATCAGTTTCTTTCCCGGAGATCCTTCTACATCAGAG
GATAAATCAAATGATCCAGCTCCATCAATGTCAAGAAAAGACTCGATAGGGGATCTGCTG
CTGAATCTGCCTAGAATCGCATCGTTGCCTCACTTTCTCTTCAATATCTATGAAGATTCC
GACCACCCAGCTAGATAGAATCTGCTTAGTTTATCATCATCCAGAAAAGGATAGCCTAGT
TGCTTTTGTATATAGCAGGCATAGCGCCCTCTAAGACACTGCTTAGCTACAGTGTCCAGA
TGTTGTGCAGGTAGTATATGTATATAGTCATCTTTTATGTTAGTTCGTGCAATAGACAGT
ATTCTTCAAGCGCTCCGAATAGTTTTTTAATGACATTTACTTCATTTTTTGTAAAAATTT
TACCAAAAGATACCTCTTTAACTGGTATCTAACAACTTATCCTTTCAAATGTTGATCG
