Microarray Probes on PGSC0003DMT400036858
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_6598_PI426222305 |
JHI_St_60k_v1 |
CGTGCAATAGACAGTATTCTTCAAGCGCTCCGAATAGTTTTTTAATGACATTTACTTCAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400036858
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400036858 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G24100.1 |
+1 |
5e-22 |
96 |
66/181 (36%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466 |
Transcript Sequence (898 bp)
>PGSC0003DMT400036858 898 pgsc_dm_v3.4
TAAGGCTTAGTATTTGTGAATTGTCTTATAATCTGCTGTACTGTCATTTAACCTGCAGTG
ATGGATACAAGGGAAATTCAAGATGTCAGTAGAGATATGGAGCAATTGAAAGGCCTCGGC
AACCTAGATCAGATCCGAGTGCCTGGTCTTCATCCTTCCATGTCAATGAAAGATTTAGTG
AGCCACTTTGAACAACGTTTTTCTGAGCAGGGAACGTCCGAAGTTATATGCCTGTCCAGT
GATGAACGCCAAAGCTTGGAGATTCTGGAAGAGATCTCGAGGTGCTTGTTTAGTGATACT
CAAAATATGCCAGCATCAGATGAGAAATCCCTCATGACAAGGGTCAATTCTCTGTGCTGT
CTTCTTCAGAAGGATCCCGCAACAGCTCATAAGAGTGAGAATTATGATGATGTTGCAGTT
GGAGGTAAGAGAACTGATGAACTGATCAGTTTCTTTCCCGGAGATCCTTCTACATCAGAG
GATAAATCAAATGATCCAGCTCCATCAATGTCAAGAAAAGACTCGATAGGGGATCTGCTG
CTGAATCTGCCTAGAATCGCATCGTTGCCTCACTTTCTCTTCAATATCTATGAAGATTCC
GACCACCCAGCTAGATAGAATCTGCTTAGTTTATCATCATCCAGAAAAGGATAGCCTAGT
TGCTTTTGTATATAGCAGGCATAGCGCCCTCTAAGACACTGCTTAGCTACAGTGTCCAGA
TGTTGTGCAGGTAGTATATGTATATAGTCATCTTTTATGTTAGTTCGTGCAATAGACAGT
ATTCTTCAAGCGCTCCGAATAGTTTTTTAATGACATTTACTTCATTTTTTGTAAAAATTT
TACCAAAAGATACCTCTTTAACTGGTATCTAACAACTTATCCTTTCAAATGTTGATCG
