Microarray Probes on PGSC0003DMT400036036
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_15893_PI426222305 |
JHI_St_60k_v1 |
GAGAGTTGTCAAATGTAGTTAGTTATGTTGGAGCAATGTAACTAACACTCGGTTTGGATC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400036036
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400036036 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G21350.1 |
+1 |
3e-103 |
325 |
214/370 (58%) |
plant U-box 8 | chr4:11356143-11357267 REVERSE LENGTH=374 |
Transcript Sequence (2214 bp)
>PGSC0003DMT400036036 2214 pgsc_dm_v3.4
TATATATATTATCTATAGATAGATACGTATAGAAAGAGAATCTAGAGAGAGAAAACAGAA
ACCCATTTCCCAGAAGGAACAAAAATAGAAATGGCAACTTCAACCCAGTTCCCGGACGAT
TTTCGGTGCCCGATTTCCCTTGAGATTATGTCCGACCCGGTTATTCTCTCGTCGGGTCAT
ACCTTCGATCGCTCTTCAATCCAACGGTGGGTCGACTCCGGCCACCGGACTTGCCCGATC
ACCAATCTACCCATTTCCGACCCGGTTTCTCTCATCCCTAATCATGCCCTTCGGAGTCTC
ATTTCCAATTATACCCTCGTCTCTTTCCCCAAACCACTGGCGTACCCTGACCCACAGTCC
CTTATTCAAACCCTTATTGCTTCTTCTTCTTCTTCCAATTTGGATTCTAAGCTCAACTCG
CTCGACCAACTAAGTAAGCTTTCTAAGCGTGACTTAGCGATCCGAAGGAAACTCACTGAG
TCAGGCGCTGTTTCTGCTCTTCTCAATTGCGTTAACTCGGATGATGACTCGGGTGGTTTG
CAGGAGAAAGCGCTTCATTTGTTGTTGAATTTGAGCTTGGATGATGATAACAAAGTGGGG
TTGGTGGCAGAAGGGGTTGTGGGGAAAGTGGTCTCCGCTTTACGAAGAGGTGCTGGAGAC
TCGAGGGCGGTGGCCGCCACGGTTTTGACGAGTTTAGCGGTGGTGGAAGTGAATAAGGCA
ACAATTGGGGCATACCCAGATGCAATTCAAGGGTTAATTTCGCTGCTTTGGGGTGGCAGC
GGTAGAGAGAGAAAGGAAGCTGCTACTGCTCTCTACACGCTGTGCTCTTTCCCCGATAAT
CGGGTTCGGGCCGTGGAAAACCAGGCTGTTCCAGTACTGATTAAGAATGCTAATTCAGGC
CTAGAAAGATCAGTTGAGGTATTGGGATTATTAGCAAAATGTAGAGAGGGTCGTCAAGAA
ATGATTAAATACTGTGGGTTATTGGATGTTTTGATAAAATTCTTGAAAAATGGGTCTTCA
AGAGCTGTGCAATATGCTCTTTTGACCATCAGTTTGCTGTGTAGTTACAATGAAAGGATG
CGTGTGTTGGCTGTAAGAGAAGGGGTGTTTGAGATTTCTGTTGGCTTATTAGAAGATGAT
AATGAGAAAGTGAGAAGGAATGCTAATAGCTTGATTCAGGTTTTACAAGGGAAAAGATTA
AGTCTTTGATTGGTTTATAAGGAAAAGATGTGAATTTGGCAAGTGTTGATTTTGAATGGA
TTATGGAAGCTTTGGAGGGTGAAGAAGAAGGTGAGTTGGGCTTCCTCAAAATTATTTTTG
TTGAATAGTTTTTCTTTGTACAAAAAGATTAGAATTTTAGGGAAAAAAATGTGTATCTCT
CTTTTCATCTATCAATCTCTCTTTCTTTTTTTTTGGTTTTATATTTTCAAAATAAGAATG
AAAAAAAAAAAAAAGATCAATGGTTCTTTCACTGTCTTTCTCTTGTCTCTTCCATTCTCC
TCATGAGTTCTGTTGATGTAAAATTAAAAATCTAATATTTCCAGTTTTTCCTTTTACATT
AGTAAGAATGATCAATGAGAGCCTACATATAGCTGCTTATAAACAGTATACAAATACAAT
AGTGTCATAGATATTTTCTAGTGCTGGTAAAGAAGAAAGATTTGTTCTGGCTATTTTTAT
CCACATTGGTACACTTGCTTAAAGATTTCATTTGTGGTACTTTTTGTGCATGGAAAGGGG
TGAGCACATGATTGATTTGATCTTGATTTTTGGATTTACACCTTACATATTAAGACTGAG
ACTGTCCCACCTCTATTGCTACTTCATCAATTTTCATCTAACTGGATTGTAATCTGCTAA
TGGCTAAATGGTTGCTGTTAGTTGAGGTTACTACAAGCCAAAACACTTCATTCTCCAAAT
TGTTTAGAGGCGGATTCAGAATTTTGAGTTCCAGAGTTTGAAATTCTGGATAAACCGGCT
TATTGGGTTTGCAAAAACATAAACTCGTGAGCAAAAGTTGAGAGTTGTCAAATGTAGTTA
GTTATGTTGGAGCAATGTAACTAACACTCGGTTTGGATCATTGTTTCATAATGTATTGTA
TTCTATTGTACTTTACTGTATGGTAGATACAATGTTTGGCTAGACTGTATTGTTTGTTGT
TGTTTAATAACATTTTTATTGTTGACTGTATCATACTGTATTGTAATTTATAAA
