Microarray Probes on PGSC0003DMT400036020
Probe ID | Chip | Probe Sequence |
---|
CUST_15853_PI426222305 |
JHI_St_60k_v1 |
CTTGGGTATTGGCCTTAATTCTTCATCAACATCAGATAATAATTGGAGTCATACCTTGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400036020
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400036020 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G61660.1 |
+1 |
2e-58 |
204 |
171/485 (35%) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:22754003-22756171 REVERSE LENGTH=393 |
Transcript Sequence (1966 bp)
>PGSC0003DMT400036020 1966 pgsc_dm_v3.4
CTTCTTTCTTTTTACAATGTCAACCAGATTCCGGTAGTTTCTCCTCCCCACCCCTACCCC
TATATATATATATATAAATACAACTCTCAGTTCATAAATTCAGTTTCATGTAATACAAAA
CACACAAGTACTATTACGACTACTCGAGCTTTATTGAAGGAGAAGAAGAAGTATAGTTTT
AATTATTTACGAGTGAATAAAAACAAATAAGTTATGGGTGATGAATATCAAGCAAGTGTT
TGTGGAGGAAACTGGTGGAATTCAAGTAGAAGTATATTTGGTTCATCACTATGTGCATCT
TCAGTTCCTTTAGGGAACTCTAATTTTGCATGGACAAATGATCATTTGTTGGATATGAAA
TCTTCCTGTAGGTCTAACGATGAATCTGGTAATTCTGATGAATCTGTTGTTCTTCAAGAA
TTACCTAAACATGATTCCACTCTACAAATCTTGGGTATTGGCCTTAATTCTTCATCAACA
TCAGATAATAATTGGAGTCATACCTTGATGCATGGAAATGATAGGAGTGAAAGTAGTTAT
CCTTCAATACTACAGGAAGACCTAAATTCAAGCATGAATTACCAACAAGAAAGTGGGGTT
GATTGTTCAAGCAACTCATTTAAACAAGATTTCACTTTAGGAATGAATCATCCAATCACT
AGCTCAACTAATACTCATCATCATGATCAAACCTTTCCAATGAATTCATCTTTCCCTAAT
TATCCTTCAGCTTTACTTCAAACTTTATTTGATAATGATCCTCCTCCTCCTCCTCCTCAA
CAACAACAACAACAATTACAACAATCTTTGTTTGCTACTAATAACAACCAACCAATGAAT
TTCCCAACATCATCCTTAAACTACAGGCCAGATTTGAATGACTTTTCACCTTCTATGTCT
AAATTCCGTAATTCCTTGTTGATACCAAAACAAAGTACACCTTCTGATCATTTTCCAAAT
TACTCTCTTAATGTTACCACTTCTCTCTACAATACTTCATCAGCCACATCCTTAAACAAT
ATGCGCGGTACTCTTATGCCTTGTATGCATCCACAAATTCTCCAGTCACCATCATTTAAC
GAGAATTCCAGAGCTCCTAACGTTACTCCAAAGTGTAAAGTTGAAGATTTAAGAGAATCG
AGGGTGACTAAGAAAAGTGTGAATAATGAAGCAACATTGAAGAGGGCAAGAATAGAGACA
CCATCACCATTGCCAACTTTTAAGGTCAGAAAAGAGAAATTGGGGGACCGTATTACTGCT
CTCCAGCAATTGGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTTCTCCATGAAGCT
ATTGAGTACATCAAGTTTCTCCATGATCAAGTCAATGTACGTTAATTACTCAAATTAATA
AATAATGATTCAAATTAAACTTACATGTTCTTTGTTTTTATTTAATTTCAGGCTCTTAGT
ACTCCTTATTTGAAAAATGGATCAAGCACTCAACACCAACAGATTGTTGATAAGGTTAAG
GAAGAAGATTTGAGGAGCCGAGGATTGTGCCTGGTACCGATATCGAGTACTTTTCCAGTA
GCAACTGAAACTAGTACAGATTTTTGGACTCCAAATTTTGGTGGTACGTTCAGATAGAGA
GGCTTGAGACGAAGTGATTTATTTTTTACGTACTAAAAGGGAAAGTGAGTATTGACAGCC
AATGCTAGCTGGGCCATATCTACAGGCAGAATGATGTGTTGGTAGGCTAAGTACATGATT
ATAGAGAAGATTAAGTGTAGAGCTGTAATGACATTAATTAATTAATAATCGGCTTGGATT
AGGAACAGGAACAAGTGCTAAATTTAGCTAAGACTACTTTATTTTAACATTTGTGTTTAT
GTTTTATGTAACTTGTTGTTTTGTTGCTCTTGGATTGGCTGAATTTAGCACATCATAAGG
AACTTTTTGTTCCTGTTTCTAAATATTTATATATTTAAAATGTTCG