Microarray Probes on PGSC0003DMT400035884
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_49759_PI426222305 |
JHI_St_60k_v1 |
GTAGAGATCCAAAAGGCTCAAGAATAATAGTTCTCAAATTGTCAAAAACTCTTCTCTAGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400035884
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Source Transcript PGSC0003DMT400035884 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G24380.1 |
+1 |
1e-65 |
209 |
97/219 (44%) |
INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234 |
Transcript Sequence (942 bp)
>PGSC0003DMT400035884 942 pgsc_dm_v3.4
ATTTGTGAGAGGATGGAAGAGATAATAGGAGAAAAAAAGATGAAGATTCTTTGTTTGCAT
GGATTTAGAACTAGTGGAAATTTCTTAAAAAAACAATTAAGCAAATGGGATCCTTCTATT
TTTGCTCATTTTGAAATGGAATTCCCAGATGGAATATTTGCAGCAGGGGGGAAATCAGAT
ATTGAGGGCATATTTCCACCACCATATTTTGAGTGGTTCCAGTATAATGAGGATTTTACA
GAATATGAGAACTTAGAAGAATGCATTTCGTACTTGTGTGAGTATATTACAAGCAAAGGG
CCTTTCGATGGTCTTCTCGGATTCTCCCAGGGAGCGACTTTATCAGGCCTTTTACTAGGG
TACATGGAACAGGGGAAGATTCTGAAAGAGCATCCACCAATGAAATTATTTGTATCAATA
TCAGGGGCCAAATTTAGGGACCCAAATATTTGTAACATTGCATACAAAGATATGATGAAG
GTTAAATCAGTCCATTTTATTGGAGAGAAAGATTGGCTCAAACTTCCTTCACAAGAGCTT
ACAACAGCTTTTGAAAATCCTCTCATCATAAGGCATCCTCAAGGCCACACTGTGCCAAGA
CTAGATGAAGCAGCTGTGGAGACATTAAAAACTTGGACAAGGGAAATTGGCTTCTATTCC
ATTGAGAGTTGTGTTGGTGGAGGACCAAATGAAGCCTGCAAACACGTTAACATTGAAAAT
GGTGTGGAAGAAGGCAAAAAACTAGAGATGCCTAATGAAGTAGAGATCCAAAAGGCTCAA
GAATAATAGTTCTCAAATTGTCAAAAACTCTTCTCTAGCTATTATCTTCTATTTTTACAT
TACAAATTGTCAAGTACTCCTCTCAAGTTAGTTTAAAATAAATATATTATGCATGTAGAG
ACGACTTAACATAGTATGCAACTATTTCTATCTATTTAATTT
