Microarray Probes on PGSC0003DMT400035603
Probe ID | Chip | Probe Sequence |
---|
CUST_39118_PI426222305 |
JHI_St_60k_v1 |
GGAAAAAAGACAACGAGCTCTTGTTATTAATGTGTCGTTTGTTGACAAGTAGTTCTTCAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400035603
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400035603 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G35320.1 |
+3 |
1e-28 |
114 |
94/255 (37%) |
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:13521893-13523144 FORWARD LENGTH=225 |
Transcript Sequence (1495 bp)
>PGSC0003DMT400035603 1495 pgsc_dm_v3.4
GAAAAATCTAGACTTGGGAGAAGAGTCTACAAGCTTCCATTATTCTTCCTATAACTGAAA
TTCTCAACCTCGTTCTTCTTTCACTTTCATAAACCGAGCTCTCCAACTACCTAACAACAC
TCTGGTTGCTGCTTTGATCGATCGTTTGAGAAGGAGGTAGGTAGCATAAATTTGTGCAAA
TTGATCTCTGATAGCTTTTTAGGGTTTTTTTTGGACGCTGTTGTTAAAAGAAGAATATGG
AGCCATACTATACATTGAAGATGAAGAGGAAGGATTTGGAAGATGTTTATGATGAATTTT
CTGAATTTTCACTTTCTTCTCCCGCCAGAAAAATTCGTCGACTGGATGCAGATTTGCCTC
CCATAATAGAAGAGGTTGAAGAACCAGAGATTCCTATAGCTTTTGAGCAAGCAGCTACTT
ATCCAAGCTTCGGAAGCAATGCAGTAAATAGGGGTCTAGTAATTGAGGAACTGCCAAGTG
TGCCCGAGAATGAAGAGAGGGCAATTGTTCTATTCAAGCCCATGAACACACAGCCTGTGC
ATTCCCCTTCTAATTTCTCCGTTAAAGTGGATCCCCAGTTTCTTAATGGTCTCAAAAGTC
AAATCTTCTGGGATAACACTGCAAATGCATTTAGACTAGTTGACAATGAAGCAACGCAAC
AGGACGACTCTAGTTCTGCAAAAGAATGTCTAGCGGTTGTTCCGTGGGTTCCATCTCAAT
TTCCTTCTGCAGCAGAAGCTGAAGTCCTTAGTCAACCTGATGTTTCAGATATGATGGATG
CTGAAGATATGGAGGGAGTAGCTATGGATATTGAAGATAACAGTGTGGATGTTGAACCAA
GAACTGCAGTCGAGGCTGGTGCAGTTGGTGTAAATGATGGTTTTCATCATTGGCAACAAC
AGCATTGTATGACGACGACTCAACTGCCTCAGAACACATCAACACCTATTCCCTGGTACC
GGTAATTGGCATATAAGGATTAGGATGTTATAATTACGATTAGATATTATTAGAACTCTC
CATGGGTCTCCTCTTGCAAGGAAGCATTGGTTAGGTAAAAGAGGGTGAAGTAAATAGTAG
ATAAAAGTACTAGAATGTGAATTGAAAAGGTCAGGAGACCGTTATGTTAAATTCAGCAAG
CATGGCCTCTAATATGTCGAGCGAAGAGCTGCTTATGGTTTTCTAATGTCTCCATCATTC
TCCATATCTTGGATATGATTTTTCTTTAGTTGTTATGCCTATTTTGCTTACACACTGATA
GAGATTGTGGAATGGAAAATAGTCACTTTGGGAACGAAATTTGTTCAACTCATAATAGTT
AAAGAGGAAAAAAGACAACGAGCTCTTGTTATTAATGTGTCGTTTGTTGACAAGTAGTTC
TTCATAAAATTATTTTGGAAGTTTGTAATCACAAAAAAGAAATATGGAAATATGTGATTT
GGTATTGTACGATATTTTGATATTTTATTCATGAATTGGAGAAACTTCATACTTT