Microarray Probes on PGSC0003DMT400034952
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31316_PI426222305 |
JHI_St_60k_v1 |
CTTGTTCTTGTACAATAGTTGAGACAAGAGTATAAGCTAGGTCTCCCCATATATTGATAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400034952
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400034952 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G14830.1 |
+2 |
2e-34 |
123 |
70/118 (59%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22530.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510983-8511441 FORWARD LENGTH=152 |
Transcript Sequence (689 bp)
>PGSC0003DMT400034952 689 pgsc_dm_v3.4
CAAAACGTTACCATTAATTCCAATTACTTCTTTTTCTTCTTGTACTCAATCTTGCTGATC
AACAATAGTAGTAATGGCACCAAACAGCATAAAAAAACTCAGGAAGCTGCCTCACGTGTT
CAGCAAAGTCCTCGAATTACCGATCCCGTCCAACGCGGATGTCGAGGTGGAAGAAAACCT
CGAATTCTTCCGCTTCATGGCGAAAATCGAGCAGCATGGTGAAAATATTCGTAATGTGAG
GGCGCAAACAGTGGAGATTCATCCAGGGATTACGAAGATAGTAGTGAGAAATGGTAGTGG
TGATGGTGGTGAAGCGGAGCTACTGATGTTGGACCAATTGAATGTGGACACGTGGAGATT
TAGGTTACCCACGTCCGCAAAACCGGAGCTGGCTACGGCTGTGTTTGCGGACGGGGAGCT
AATCGTGACGGTGCCGAAAGGTGTGAACGGTCGTGGAGGGTACGGAGGGAAGGATGTTTT
GGTACGCCGCCGAAATATCACGCTTGTTCTTGTACAATAGTTGAGACAAGAGTATAAGCT
AGGTCTCCCCATATATTGATATTATTTTCTTTTTAGTTTCTAAATCTTAGGGACGAAATG
ATATATTTCTATATTTGAAAATAATTATGTTTAAAATTCTATTTCATCCTTATAATAAAA
AAATACATTATCAAATAAGCAGATCCAGA
