Microarray Probes on PGSC0003DMT400034191
Probe ID | Chip | Probe Sequence |
---|
CUST_51641_PI426222305 |
JHI_St_60k_v1 |
CATGCTGTGTATTGTAGATTTGCCATGTCTTACTTCTGAAGTTTTATTTGTTGTAAGGCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400034191
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400034191 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G28300.1 |
+3 |
6e-83 |
273 |
164/297 (55%) |
Protein of unknown function (DUF1421) | chr4:14014860-14016823 FORWARD LENGTH=496 |
Transcript Sequence (2025 bp)
>PGSC0003DMT400034191 2025 pgsc_dm_v3.4
TATAATACAAAACCTAGGCGATTTTTTTTTCTTTGACTGTTTGATCAGTGTAGTGAAACC
CTAGTGTTTTTTTTTTTTGTGATCCGTGAAGTATGGCATCTGGATCGTCTGGCAGGCCGA
GTAATTCTTCGGGTTCGAAGGGTTTTGATTTTGGGTCTGATGATATTCTCTGTTCTTATG
AAGATTATCCACATCAAGATGCCTCTAATGGAACCCACTCTGATCCTGCGATTGCTACCA
ATTCTGCTAAGGAGTTCCACAAAAACAGAATGACGAGGTCATCAATGTTTCCCACTTCGA
CGTATAGCCCTCCAGAGGAATCTTCCTTCAATCAAGACATGATATGTACTGTTGAGAAGA
CCATGAAAAAATATACGGACAATCTCATGAGATTTCTAGAGGGTATCAGTTCACGCTTGT
CGCAGCTGGAACTGTACTGTTACAACCTTGACAAGTCCATTGGGGAAATGCGGTCTGATT
TAGTTCGAGATCATGGCGAGGCAGATTTGAAACTGAAGGCTCTTGAGAAGCATGTTCAAG
AGGTCCACAGATCTGTACAGATTCTGAGAGATAAGCAAGAACTTGCTGAAACTCAGAAGG
AGCTGGCTAAGCTTCAGTTTGCGCAGAAAGAACCAGCTTCAGCGAACAATTCTCAGCAGA
ATGAGGACAGAAATGCTCAACCCGTGTCTGATTCCAATAAAGGTGACAACTCAACTGATG
TGAATGGACAAGAACTGGCACTTGCTCTACCCCATCAAGTAGCACCCCGAGCTCCTCTTA
CTAACCAACCCGTCGAGCAGCCACAACAGGCACCTCCACAACCAATTCCATCTCAAAGTA
TGACGCAGTCACAAGGTTACTATTTACCCCCAGTGCAGATGTCAAATCCACCAGCTCCAA
CTCACTTGTCCCAAGGTCAATATCTTTCATCTGACCCCCAGTATCGAACTTCTCAAATGC
AAGATCTTTCTAGGTTACCACCCCAGCCAGCAGCACCTCCGGGGAATCAGACCCCACAAA
TCCAGTCAATGCCCCAATATCAGCAGCAGCAATGGACGCAACAGGTACCGCAGCAGATTC
AAGCATCCCAACAGGTTCAACAGCATCAGCTTCCAACTGTGCAACAGCAAGGTAGACCCT
CATCACCTGCTGTTTATCCCTCTTATCCACCCAATCAACCGAATCCTTCTCCTGAACCGG
TCCCCAATAGCATGCCAATGCAAATGTCATATTCTGCGATCCCTCAATCAGTTGCATGCC
GTCCAGAAGCAATACCCTATGGGTATGACAGGTCTGGTAGGCCACTTCAGTCACAGCCTC
CAACCCAGCATCTCAAGCCTTCGTTTGGTGCTCCAGGGGATGGGTATGCAACTAGTGGGC
CTCATCCATCTCTTTCTGCAGGAAATGCATATTTGATGTACGACGGTGAAGGCCCAAGGG
GACATCCATCACAACCACCAAATTTCCCACAAAGTGGTTATCCTCCCTCCAGCTTCCCTC
CCCAGAACGCACAGTCCTCCCCAAGCCCCAATCATATGGTTCGTCCACCTCAATTGATGC
GCACTCATCCTTACAATGAATTAATTGAGAAGCTGGCAAGCATGGGCTACAGGGGTGATC
ATGTGGTTAATGTTATCCAAAGGCTCGAGGAGAGTGGTCAGACAGTTGATTTCAATACTG
TGCTCGATAGGCTGAATGGACATTCTTCAGGTGGTCCTCAAAGAGGATGGTCGGGTTAGG
TCATTATCCCAAACCTTTCTAATCATGTTTTCATGTAGGGTCATGGGAAATTTGAAAATA
GTGTAAGTGCAATTTGACTCGAATACTATCTATTTGCTGAATAAGGGTCATATAATTAGG
CAGTTGACGATGATGTATACAGCACTATCATGCTGTGTATTGTAGATTTGCCATGTCTTA
CTTCTGAAGTTTTATTTGTTGTAAGGCAAAATGTTTTCAACATTGTAACGTAGGAGAATT
GATGAATACCTCTTTTTTAAGATTTAACATCTTCTCTCATTCTTG