Microarray Probes on PGSC0003DMT400033609
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_317_PI426222305 |
JHI_St_60k_v1 |
TGGATAGGCCAAAGAAGGTCTCTTGATGAAATGCTATATCTTGGACGACTGAGATGTCGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400033609
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400033609 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc04g076120.2 |
+1 |
0.0 |
629 |
319/436 (73%) |
genomic_reference:SL2.50ch04 gene_region:58665257-58669513 transcript_region:SL2.50ch04:58665257..58669513+ go_terms:GO:0016754 functional_description:Serine carboxypeptidase 1 (AHRD V1 ***- B6TC80_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase |
| TAIR PP10 |
AT1G73300.1 |
+1 |
7e-133 |
394 |
212/437 (49%) |
serine carboxypeptidase-like 2 | chr1:27559673-27562048 REVERSE LENGTH=441 |
Transcript Sequence (1308 bp)
>PGSC0003DMT400033609 1308 pgsc_dm_v3.4
ATGCTCATAATTCTGCATGAACCCTCTGAGTTGAGCATTCTTGAGATTAGTAGTATCATT
GAAGTTCTTGAGTTCCAAGTATTTGAGAGAGTTTGTGCAGAAAGAAGAAAAACAATGGTC
AAAAGAAAGCAAAATAATCTTGTGCATTGCTGCAATCTGTTTTCAGTTCTTCTTGTTGTT
GTTGCAGAAGTAATACATTTTCCAGAGTGTGTTGAGGCTGCTGGTGCACCTGTTAAGTTT
CTTCCAGGATTCCAAGGGCCACTTCCTTTAGAACTTGAAACTGGGTACATAGGAGTGGGT
GATTCAGATGATGTTCAACTATTCTACTATTTCATTAAGTCTGAGTCTAATCCAAAATCA
GACCCTCTTATTTTATGGCTAATTGGAGGCCCTGGCTGCTCTTCTATATCTGGCCTTCTC
TTAGAGATAGGTCCAATAACGTTTGAGCCAGCGGAATATAATGGTAGCTTCCCCTCACTG
GTCTTGAATCCTCATACATGGACAAAGGTGGTAAGCTTTATATTTTTAGATCTTCCAGTT
GGTACTGGATTTTCCTATGCAAGAACTTCTGAGGCTCGTCAATCAGATGATCTACAAGCT
AGTGATCATGCATATCAATTTCTACGCAAGGGATATTTACTGGGAAATCCGGCTACATTT
CATGGTGAATACAATTACAGGATCTCATATGCTCATGGAGTGGGTCTAATTTCTGATGAA
CTTTTTGAGTCCCTGAAGAGAAACTGTAAAGGAGAGTATTTCGATATACATCCTAGGAAC
ACACAATGTTGGAATGATAGGCAGACTTATGATCAGATGCTTGGTGGAATTACCAATGCG
CACATTTTGGAGCCCAAGTGTGAGTTTGCTTCACCAAGGCCACAAAAATGGATAGGCCAA
AGAAGGTCTCTTGATGAAATGCTATATCTTGGACGACTGAGATGTCGAGGCAGTATTGGT
AAATGGAAGCGATGTGCTGGGGATGCTTTGCCTTACCAAAAGATAATAGGAAACAGCATT
CCATATCATGCAAATCTCAGTGTCAAAGGCTATAGGTCCTTAATATACAGTGGAGATCAT
GACACGATGATCCCTTACACATCAACCGAAGCTTGGATAAGATCTCTTAACTACTCTATT
GTTGATGATTGGCGACCATGGATTGTTGATGGTCAAGTTGCCGGGTATACAAGGACATAT
TCAAATAAAATGACATTTGCCACAGGAGGAGGACATACAGCTCCAGAGTACAAGCCTGTT
GAATGTCTAGCCATGCTAAGGAGATGGTTATCTTATCAGCCTTTGTGA
