Microarray Probes on PGSC0003DMT400032924
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1300_PI426222305 |
JHI_St_60k_v1 |
GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400032924
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400032924 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g093720.2 |
+1 |
0.0 |
739 |
446/491 (91%) |
genomic_reference:SL2.50ch02 gene_region:49041484-49045270 transcript_region:SL2.50ch02:49041484..49045270- functional_description:Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 |
| TAIR PP10 |
AT5G40700.2 |
+1 |
7e-24 |
103 |
59/134 (44%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 475 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143; Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). | chr5:16292047-16293443 REVERSE LENGTH=303 |
Transcript Sequence (2005 bp)
>PGSC0003DMT400032924 2005 pgsc_dm_v3.4
CAGATAAGAGAGATTACATGCCATAAAAAATCATTTTAAGTAACGGCACAATAATTATTC
TGTTGATTTTTTCAGGTTCCATTCTTGTTATTTTCTAGCCACACTGATGATGGAAGACTC
AGCTTGTCTTATACATGCTTTCTCTTATGCTTCTGCTATACCCAATGAAATAAAACAGGT
ATAAATAAAAACTCCACTGTTTTATTTTTCAAGATTCTTCTCCTTTCTTGCTGATTTTTT
GGGATGGAATTGAGTATACAGGGGAACCCTGTGCATGCACTTGGGGAGTCAATTTCTTTT
GGGAGATTTGTGTCTGAGTCATTGGATTGGGAAAAATGGTCAACTTTTTCTCATAAAAGA
TATGTAGAGGAGGCTGAGAGGTATGCTAAGCCAGGTTCTGTTGCCCAGAAAAAAGCTTTC
TTTGAAGCCCATTACAAGAAAATTGCTGCCCAAAAGGCTGCAGCTTTGCTTGAACAAGCC
AATCAAGAAAACCCCAATTCTGAAATCACCAAGAATTCAGCCCCTGATTCTACTTCACTT
GTAAAACCCCGTGTAGAAGCTAATCAAGAAGAGGTTCATGAGAACCCTGATGCTGTAACA
ACAGATTCCATGGTTAAGGATTCAGTTTCAGTTGCTGATGCGGAGGAGATAGAGAGTGAG
TCCCCAGTGGAGGGTCCTGGTACTCCTGAAGCTACAGAGAAAGAACCATCAAACCAAATT
GAGAATGGTGAAACCCAAGAAACAGTTTCAGGTTCTGAGATTAGTGAAACATCTCATACT
GAGAAGCCTTTGCTGAAGATTAAGCAGAGCTCCAGCTCTAAACTTGAGGATGATCCTGCA
TCGGTGACAAGCAAGAAAAAATCTGCTTTTTCTTCATTCAAATCAGCAGTCTACTCCAAA
AAATCAAAATTTCCATTTTCGCCTTCTAGGCATAACATTCTTCTTGATGTCGATAAAGAG
AACAATTTTACACCAATCACAACAAATTCTAACTTGGACTTGATGAATGAAGTGAGATCA
ACCCCAAAATCTTTGAACAAGTTGATCAACTTTACTCCTGCCAAAGAGGCACACAAGATA
CCTCCTCCACCTCCCTTCCTCAAGAAGGAAAGTTCAAAGGTTGCTCCCACTACTAGCAAG
GCGGCATCTAAGCAGTGTGCAACTCCTCTTAAGACTCCTATGGCAACATCAAATGGTGCA
TCAAACCGTCCCATGACAACGCCATCTTCAGAAAGCAGAAGGATTAAAACACCGATTCAT
CCCTCAGCTTCAGGAAGTAGAACAGCAGGGCCTAAATGGAACATTTTGTCTTCTGTTTCC
AAGTCTTTCACAGCCTACCGAAACAAATTACAATCACCAACTTTATCCACTCCTTTCTCT
TTGAGGACAGAAGAAAGAGCTACACGAAGGAAACAGAAGCTTGAAGAGAAATTCAATGCC
AATGAGGAAAAGAAAGTTCAACAACAAACCACATTAAAGGAGAAAGCAGGAACGGAACTT
AGGAGACTTCGACAAAGCTTTTGCTTCAAAGCTCGTCCCCTGCCTGATTTCTACAAGGAA
ACAGAAACAGCAAAAGATCACGCAAAAAAGATCCCAGTAACACAAACTCAATTGCCCAAA
CGTGGAAGAATGCCATTTCCCAGCTCAAAGCAAGGCTTAGTCTCGAAGCCAGCTTCTTCA
TCTTTGGCGAAGAATGACTCTTGCAAGAATCCAAGAAAGAAGACTAGCTGAAAAAACTCA
CAAATCTTCACTCCTTGCAAAGAGTAGTGTCTTATTAGAATGTGTTTCAATTGGGTATTT
CTTCCAACAGAATGAATGTTTTGGAGGTGTATGAATGTGTCTTCCCTTAATATGATTCAA
GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT
AAAAATATTTTGTCCTCTTCATACATTCAAATTGCCTTTGCAGCTCAAATTTAAACTTAA
AAGTTCATGATTTTTCCTAGGCCAC
