Microarray Probes on PGSC0003DMT400032845
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1463_PI426222305 |
JHI_St_60k_v1 |
GCTTCATCTGATCCTTTTTACGCAGTTATAGCTTATAGAAACTTTAAACCAGTGCATGAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400032845
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400032845 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g093550.2 |
+1 |
0.0 |
538 |
264/291 (91%) |
genomic_reference:SL2.50ch02 gene_region:48960510-48961856 transcript_region:SL2.50ch02:48960510..48961856+ go_terms:GO:0008152 functional_description:Methyltransferase type 11 (AHRD V1 ***- C7QSM0_CYAP0); contains Interpro domain(s) IPR013216 Methyltransferase type 11 |
| TAIR PP10 |
AT3G01660.1 |
+1 |
8e-116 |
340 |
173/279 (62%) |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:245532-246432 FORWARD LENGTH=273 |
Transcript Sequence (1015 bp)
>PGSC0003DMT400032845 1015 pgsc_dm_v3.4
TGATGTGTGTGTTCATCAAAGTCAAAATTAGACATGTTTCTCACCATAGCTCCAAATTCC
CATCCCAAAACATGGGAATCCTCAAACTTACACTTGTTTCCTCTTCCATCCAAATTAAAA
ACACAGCCCTCAATAATAATTCCAAAAGCCTATTATAAAAATGAAGATAACAACAATTCT
ACGAAATCAACAGCAGGAAAAATCAAACGCATGGTACTTACTCAACAAGGAAGAACCAAA
CTTAACATTTTACCAGACAGGGAATTTTATGCCTTTCCAAGATTCGTCACACACGTCGAT
GATCGTTTCATTTCCAATTTAACAAATCTTTACCGGAAATGTTTGAGGCCTGAATTTGAG
ATTCTTGACCTTATGAGCTCATGGGTGAGTCATTTACCACAAGAAGTGAAGTACAAAAAG
GTGGTAGGTCATGGACTTAATGCCCAAGAGCTTGCCAAAAATCCCAAATTGGATTATTTC
TTTGTGAAGGATTTGAATGAAGATGAGAAACTTCAGTTTGAAAATTGCAGTTTTGATGCT
GTTTTATGTACTGTTAGTGTGCAGTATCTTCAACAGCCTGAGAAGGTTTTTGCAGAAGTA
TTTCGAATTCTAAGACCTGGAGGAGTGTTTATTGTAAGTTTCAGTAACAGATTGTTCTAC
GATAAAGCAATTAGTGCATGGAGGGACAGTTCAGGGTACGGAAGAGTGCAACTTGTGGTA
CAATATTTTCAATGTATTAAGGGATTTACAGAGCCAGAAGTGATTCGTAAATTACCAAGT
AATGATGATCAAGAAAATAAATCACCTCTGAGTAAAATAATGCAGTTGATTGGGTTGTTA
TCAGCTTCATCTGATCCTTTTTACGCAGTTATAGCTTATAGAAACTTTAAACCAGTGCAT
GAATAAATTTGTATTCATACATTGTAATTGTAATTCAATTCAATTTGTAGTAAACGTGGG
TATATTATTGTGTTACATTTTTATTTTTATTTGTTGTATAAGCCCAATTTGTAAT
