Microarray Probes on PGSC0003DMT400032816
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1106_PI426222305 |
JHI_St_60k_v1 |
GCCTTGATGTGGCTATAAAGCTAGGTATTGCTGGATGTGATGTTTTAAAATTTTCAATTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400032816
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400032816 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g093360.2 |
+1 |
0.0 |
1127 |
608/632 (96%) |
genomic_reference:SL2.50ch02 gene_region:48831308-48835273 transcript_region:SL2.50ch02:48831308..48835273+ go_terms:GO:0004711 functional_description:Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase |
| TAIR PP10 |
AT3G27580.1 |
+1 |
0.0 |
639 |
370/599 (62%) |
Protein kinase superfamily protein | chr3:10217671-10219484 REVERSE LENGTH=578 |
Transcript Sequence (2533 bp)
>PGSC0003DMT400032816 2533 pgsc_dm_v3.4
AACAGAGTAAAATATAGAAAGAGAGAGAGAGAGAAATCTGATGTATCAATTTCTTCACTA
AGCTTTTCATTTGCCTTTTTGCTTTGTTTGTTGTGAGTTTTGTTTGATTGATTCATTTAC
TCTGTTTCTCTATCCTTTATTCGAAATAATTAGATTACTCAGTCACTCACATCTATTAGA
CTCTTTTTATTGTTACGATCGGATCTGAAAAGGGGAGAGGACCCAGAAAGAAAAAAGGTG
CAAAGCTGTTTCCCTTTATAAGCGGAAAGGGTCTCAATAATCATGGCACATCATTCGTTT
TTCTCCATTTGATTATCAGTGTTTACACCAAAGAATACAATGGAGTCTCTTGTTGATGGA
ATCAGTTCCTTGCCAAATGTTCACAATTCATTCGCTGCGGTCGAGTGCAATACATCTTTG
GCCTCCAAGATAAGTCATCCTCCTTTGATGAAACAATCCGAAAACAAAGAGTCATCTATC
TCATATCCAATAGCAATGGACCTTGGTTCCAACACAGCTCATACTCAAACCGGATCAGTG
ACTGGTTCAAAGCATTTTGAAGCAAATGAAGATACTGTAAATCAATTAGCAGAAGGTTGT
TCAGGAGAGCAGGTTTTGGCTTTGGAAACTGAATCATCTATCAAGGATTTACACTATGTT
TCGAAGAATAGTACTTCAAACGATGATTTGAATGCTGCTGCTGCCAAAGGATTGCCATCT
GAGTCAGGAATCACCTATTGTCCTAGTCCTCAAAACAGTTTTTATTCTGCTACACAGTAC
ACAGAAGCCAAACAAAGTTTTTCCAACACAGAAGTCAGTGAATGTGCTAGCAGCACTGTG
GACAAGTCTGGTGAAAGTGGTGATGTTAGTAACTCTTGTGATCTTGTTGAGAGCAGAAAA
ACAAGCTTCTACAGAGGCAGCACAGGTAGTGATGTTAGTGATGAAAGCAGCTCTAGTAGT
TTCAATAGCACAACAGTATATAAACCGCATAAGGCAAATGATACAAGGTGGGATGCAATT
CAAGTTATTAGAGCCCGTGAGGGAACATTGGGTTTTAACCACTTTAGACTGTTGAAGAGA
TTGGGATGTGGTGATATAGGAAGTGTTTTTCTAGCAGAGTTGATTGGCACAAGATGTTTC
TTTGCCATGAAAGTGATGGACAAGGCAGCTCTAGAAAGTCGCAAGAAACTTGTGAGAGCT
CAAACGGAAAGAGAGATACTGCAGTCTCTGGATCATCCCTTTCTACCAACACTGTATTCA
CACTTTGAAACAGACAAATTTTCCTGCTTGGTGATGGAATTCTGCCCTGGTGGAGATTTG
CATGCACTTAGGCAAAAGCAGCCAGGAAAATTTTTCCCGGAGCATGCTGCCAGGTTTTAT
GTGGCTGAAGTCCTTCTTGCTCTAGAGTATTTGCATATGCTTGGAATCATTTACAGAGAC
CTTAAACCAGAGAATGTTCTGGTTCGAGAAGATGGCCATATAATGCTTTCTGATTTTGAC
CTCTCTTTGAGGTGTGCCGTGAGCCCGACTCTAGTTAGATCCTCAAATTCAAGCTTAGAG
TCCAAGAGCTCATCATACTGTGTCCAGCCTGCTTGTATTGAGCCATCTTGTGTCATACAG
CCTGCATGTATCCAACCTTCATGTTTTACACCACGTTTCCTAAGCAAGACCAAGAAAGAA
AAGAAGTCCAAACAAAAAACTGAAACATATAACCAAGTGAACCGCCCTCTTCCAGAACTC
CTTGCTGAACCAACGAGTGCTCGATCAATGTCTTTTGTGGGGACACATGAGTACCTAGCT
CCAGAAATTATAAAAGGTGAAGGACACGGCAGTGCTGTAGATTGGTGGACATTTGGGATC
TTTCTCTATGAACTCTTGTTTGGACAAACTCCTTTCAAGGGAGCAGGCAACAGGGCAACG
TTGTTTAACGTTGTCGGTCAGCCCTTGAAATTTCCTGAAACACCTAGTGTTAGTTTTGCA
GCAAGGGACTTGATAAGAGGCCTACTTGTGAAGGAGCCACAACATCGCCTTGCATATAGG
CGAGGGGCTACTGAAATAAAACAACATCCTTTCTTTCAGAATGTGAACTGGGCACTTATA
AGATGTACCAGTCCTCCAGATGTACCAAAGCCGTCCTCCATGACATATAATATGCCCCGT
ACACCGCCAGCAGGAAAGACCCCCGGAGTTGATGTGAAGCCTTCAGGTAATTATTTTGAG
ATTGATTTCTTCTGAGGAATTCTTTTCCTTGGCAGCAATGCCCTCACTGCCCTTATACGA
AGAGCTCAACGTTTAGGAAAACACTGTTTTTGTGTTCCTTTATGCTAATGTAAAGTGCAT
ACTCTGTTGAAATGCAAGATGCATAGGAATTAGATGTTGAAGGCCATTTTTCCTTGTATA
AGTATGTTGTTGATATTAATGAAGAAGGCCTTGATGTGGCTATAAAGCTAGGTATTGCTG
GATGTGATGTTTTAAAATTTTCAATTGAAGAATCAAAAGTTGATGTGCCATAATCCAGTC
ATTTAAAAAGTTG
