Microarray Probes on PGSC0003DMT400031148
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_31852_PI426222305 |
JHI_St_60k_v1 |
TTCTTCACTATCTTCCTGGATATTTGAAGGACCATAACAAATGGCCTGCCCTCCCTCTTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400031148
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400031148 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G05600.1 |
+3 |
5e-128 |
376 |
180/284 (63%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371 |
Transcript Sequence (1102 bp)
>PGSC0003DMT400031148 1102 pgsc_dm_v3.4
GTTGTTGTATATATATTTATTTTTGTAGAAAATCCAGCGGCAAGTTGCCCCTTCGTATTC
TCGTCGTATCCTCTGTAAATTTCTGTGAATACAGAGAGATTTGTTTAGATGTTGTGGGGT
AGAGAAGGAATGTTTTGCATATTATAAGGTAAATGATATTTTTTGTTATTGTTGAAATAA
AGAGTAAATTAAGTTAGCAAATAATGAAATCCCCACGAGATAATTGGCCAGAACCAATAG
TTCGTGTCCAATCTTTATCTGATAGTGGGATTTCAACAATTCCAACAAAATATGTGAAGC
CACTAAATGAGAGGCCATCATTAAGTAAGTTTAGTGATGTTAATATTCCAACGATTGATC
TTGAGGGAAGCAGTAATTGTGAAGAAATTTCAGAAGCGTGTCGAGATTGGGGATTTTTTC
AGGTTGTTAATCATGGCGTTCCGCGAGAGCTCATGGATGAAGCGCGACAAGTTTGGAGAG
AGTTTTTTCATCAGCCGATGGATGTTAAGCAAAGTTATGGAAATACGCCTAAGACTTATG
AGGGATATGGAAGTCGACTTGGAGTTGAGAAAGGTGCTATTCTTGATTGGAGTGATTATT
ATTTTCTTCACTATCTTCCTGGATATTTGAAGGACCATAACAAATGGCCTGCCCTCCCTC
TTTCCCTAAGGAAAGTGATGGAAGAATATTCAAAACAAGTGGTGAATTTTGGTGGACGTT
TAATGAAGATATTCTCAAAAAATCTTGGATTAAAAGAAGATGTTTTACAAAATGCATTTG
GTGGTGAAGATATAGGAGCATGTCTAAGGGTAAACTTTTATCCAAAATGTCCACAACCAG
ACTTGACCTTAGGCCTTTCTCCACATTCGGATCCTGGTGGCATGACCATTCTCCTCCCGG
ACCACCATGTCGCTGGCCTTCAGGTCCGACGCAACAACGCTCATTGGATCACTGTAAAAC
CAGCTTCTCATGCTTTCATCGTCAATATAGGCGATCAAATTCAGGTTAATACATCTTATT
TTTAGTACCACAACATATATTTTGACGAAATTAATTTTCTTAATACAGTACTAAAGATAA
ATATAATAATGCATGTATATCG
