Microarray Probes on PGSC0003DMT400029165
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_10417_PI426222305 |
JHI_St_60k_v1 |
TCCAAGAAATTTTCTTATTCAAGCTGTTGTTGGAGTTTTTGCTTTGGGGTTCATTGATGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400029165
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400029165 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G30845.1 |
+2 |
6e-28 |
105 |
50/81 (62%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15019895-15020319 FORWARD LENGTH=114 |
Transcript Sequence (830 bp)
>PGSC0003DMT400029165 830 pgsc_dm_v3.4
GAAAATGTTGATCACACAAAATTTTATCAATTGCTATTCTTCATCTACCAATTTTTCTTA
TATTTTTTGGAAATATAGAAAAAGAAGATTGAGTACTAAACATTCAACAATTTCATTTGC
AAAAAAGAGAGAATTTTCTGAGAAATCAAAAGTTGAAGAAAACACAATTTCATCATTGAA
AATTCCAAGAAATTTTCTTATTCAAGCTGTTGTTGGAGTTTTTGCTTTGGGGTTCATTGA
TGCAGGGTATAGTGGAGATTGGTCAAGAATTGGAGTGATCTCAAAGGATAATGAAGATTT
ACTGAAAATTGCAGCATTTTTAATAGTACCATTGTGTCTCTTTGTGTTATTTTCTTTCTC
TAAGAAAATTGAAGAATGAAAGCGTTTTATATTTTTATCCTTTTTTTAGAAAAGCACAAA
TTATTTTATTTTCAATCAAGTTATTACCATATCTTCTAAGTTGATATATTATTACTATCG
GTCATTACCATCAACTACTTCACGACTTGTTTTCTTAGCAAAACATGATTGAGTGAAAGA
CCAAATATAGTTCAATACTCTATCTACAGAGCCTCTAAGAAATAAGGAGGAGGGAATATG
TGGAACAAGATAAATTTTGTGTTTTCTTTCGGCTTACACGTCAATTTGGAGTTCTCGGGT
GTGTGCCATCATGACACTCGATTTTTGGATCATGACACAAACGTCATCTATAATCTCAAT
CCATCACAATATTTACATGTAGCCTAAAGAATTTACCTTTTATTTTACCATTCAAGCTTT
GTCATATCAAGTCGGGTCGGATCAGTTCCTTTTTGGTGCTCTTAAATTTT
