Microarray Probes on PGSC0003DMT400029078
Probe ID | Chip | Probe Sequence |
---|
CUST_10358_PI426222305 |
JHI_St_60k_v1 |
GCGTTTGGCTGTTTGTCTAGATCCTGATCACATGCCACTATTTGAAAAGTATTTGTATGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400029078
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400029078 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G48930.1 |
+2 |
1e-117 |
351 |
167/297 (56%) |
hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433 |
Transcript Sequence (1061 bp)
>PGSC0003DMT400029078 1061 pgsc_dm_v3.4
ATATTTATAGGTTACTCGTTTCAAGTGTGGTGGAATCGCTCTTGGTGGTGGAGTATTCCA
CACGTTATCCGATGGTCTCTCATCCCTCCACTTCATCAACACGTGGTCGGACATCGCCCG
TGGCCTCTCCGTCGCAGTCCCCCCATTCATCGACCGGACGCTCCTCCATGCACGGGACCC
ACCAACATCTTCTTTCGAGCATGTTGAGTATCATCCCCCACCTACCCTCATCTCATCAAA
AAAAGGTGAGTCCACAGGCCCAAAGTCTAGTACCACGGCCATGTTGAAATTCTCAAGTGA
ACAAGTCGGACTTCTTAAGTCTAAGTCCGAAAACGAGGGCAGCACTTATGAAATCCTCGC
GGCCCATATTTGGCGATGCACGAGCAAGGCACGTGGATTGGCAGATGATCAATTGACCAA
ATTACATGTGGCCACTGACGGTAGGTCAAGGCTTTGCCCTCCCTTGCCACCGGGTTACCT
AGGAAATGTGGTGTTCACGGCCACACCAATAGCTAAATCATGTGAACTTCAATCAGAGCC
GTTGAGGAATTCCGTTAAGAGAATTCACAATGAGTTGATCAAAATGGACGATAATTACCT
AAGATCAGCGTTGGATTACCTCGAATTACAACCTGATTTATCGACCCTAATCCGGGGCCC
GACTTACTTTACTAGCCCTAACCTCAATATTAATAGTTGGACTAGGTTGCCTGTCCATGA
GTGTGATTTTGGATGGGGTAGGCCAATTCATATGGGACCAGCTTGCATTTTATATGAAGG
GACAATATATATTATACCAAGTCCAAATACAAAAGATAGGAACTTGCGTTTGGCTGTTTG
TCTAGATCCTGATCACATGCCACTATTTGAAAAGTATTTGTATGAATTTTGAGATATTTT
TCATATGGAAAAAAGTCAAGAATGTACAACACAAATTGTGGTGTGATTTAGTTCAAGTCC
TTTTTTTTTTAGTTTTGAGATATTTTCCAAATTCTTTATTAGGAATTTGATTGTGTAATT
GATAATGTCTTATTAAGCTAAATCTCCATATTTCCTTTGTG