Microarray Probes on PGSC0003DMT400026852
Probe ID | Chip | Probe Sequence |
---|
CUST_42594_PI426222305 |
JHI_St_60k_v1 |
GGATTGCCTTCAGCAAGAAATCTAAATGTGGAACTTGATGATGATTTCCTTAATGTATCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026852
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026852 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G02300.1 |
+1 |
8e-163 |
471 |
230/409 (56%) |
Cysteine proteinases superfamily protein | chr1:453288-455376 FORWARD LENGTH=379 |
Transcript Sequence (1538 bp)
>PGSC0003DMT400026852 1538 pgsc_dm_v3.4
GGAAACGCTCCCCCTAGGCCCTACACGGTGCGAATTTGAAATAATCGGCTCTAATATTAG
TAACAGAGAATATCATCTCTACTGCTAGCTTGGTATATAGTCCAATAATTATTGTACGTC
AAAGAGTGGGCCACTACTTGTCTTTCGTTCCATGTTTTTCTTATTATCTTGTATCTACTA
CTACATATTTCTTTGAGTTTCCAACCACTATTGGAACTCAAAAAAAAGAAGGTGAAAATG
GGCATGACCAAGATTTCCTTAGCAACTCCATTGCTTTTATGTGCTTTCTTTATCTTTATC
CTGCAGGTTTTTGCAGAGAAGCCAATATCTGAAGCTAAAGGTGAATCCGTAATCCTTCAG
GAATCAATCATAAAAGAGGTGAATGAAAATGTTAAAGCTGGATGGAAAGCTGCATTCAAC
CCTCGGTTCTCGAATTTCACAGTTTCTCAATTTAAGTTCCTGCTCGGAGTTAAGCCCCCA
AGAGAGGGTGATCTTAAGAGCATCCCTATTTTAACTCATCCAAAACTTAAAAATTTACCA
AAAGAGTTCGATGCACGAACAGCTTGGCCTCAATGTAGCACAATTGGAAGAATTCTTGGT
CAGTTTCTTCATCTTATTGTTTGGTCCTTCTATGCTATATTCTGATTAGTACAATGCTGA
TGTTTTCTGTACCTTACATTGCAGATCAGGTGACTGCTCTTGCTTACTATTTAGTCTCAC
TCTTGAAAATGCTAAATGCCCTTTCCAGATTCTATAGTGGTCTTATCCTTTATATTCCAG
GGACATTGCGGTTCTTGTTGGGCTTTTGGTGCTGTTGAATCGCTTTCTGACCGTTTCTGT
ATTCATTATGGCTTGAATATATCTCTATCCGTAAATGATGTAATAGCATGCTGTGGCTTT
TATTGTGGGAATGGCTGTGATGGTGGATCTCCCATAAGAGCATGGCATTACTTTATCCAC
AAGGGTGTGGTTTCAGAAAAGTGTGACCCTTACTTCGATAATATTGGATGTTCCCACCCT
GGTTGTGAACCTATATATCCCACCCCACAGTGCAACAGGAAGTGTGTTAAGGAGAATCTA
CTCTGGAGTAAGTCCAAGCATTTCGGTGTGAATGCATACATGATCAGCTCCGATCCATAC
AGTATCATGACAGAAGTTTACAAAAATGGACCAGTTGAGGTTGCTTTAAATGTTTATGAG
GATTTTGCTCACTACAAGTCAGGAGTTTACAAGCACGTAACAGGGGAGTATATCGGAGGC
CATGCTGTTAAGCTCATCGGATGGGGAACTAGTGAGGAAGGAGAGGACTATTGGCTTCTT
GTGAATTCTTGGAACAAAAGCTGGGGTGATGATGGGTACTTCAAGATCAGAAGAGGAACA
AATGAGTGTGACATTGAATCTAATACAGTTGCAGGATTGCCTTCAGCAAGAAATCTAAAT
GTGGAACTTGATGATGATTTCCTTAATGTATCAATGTAAAATGCTACTTCATCAACAGGA
CACCTAAATAATACTACTACCAAATCTATGCAATTTAT