Microarray Probes on PGSC0003DMT400026504
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_41910_PI426222305 |
JHI_St_60k_v1 |
GCCCTTGCCTTGAGATATGAATGAATGACATTTGATTCTATATGACATTCTGGTATAGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026504
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026504 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G29240.1 |
+2 |
6e-33 |
135 |
162/606 (27%) |
Protein of unknown function (DUF688) | chr1:10217023-10218924 REVERSE LENGTH=577 |
Transcript Sequence (2671 bp)
>PGSC0003DMT400026504 2671 pgsc_dm_v3.4
AGGCTGACCATTCTTCCATTTTTCTCTCTCCAATTTGTGCCCTTTTTTTTCTCTCCACAA
CTCGCGCCATCATTCAAGGACACATTTCACTCAACTCTCACTCCTTTAACTTTCCCCCCT
TCAACTTCAAGTGATTTGGAAGGCATATACGCCATTGTTGATTGCTAATTTTGTTTCGGA
GGGAAGGGAATAGAAATTTTGTTAGTTGAACAGACAAATGGCGAAAAAGCAGCTGGATTT
CAATGCACCTCTTTTATCTGTGAGGAAAATAGCATCATCTTTAACTCCCAATGAGAGAGC
AAATAAAAAGATGGCAGATAAGGTACCACCAAATCGACAACAATCACTACCTGTCAAAAA
ATCAGATTGGGAATTGACTGAGGTGACAAAACCAGTAGCTGTTCCATTTGTGTGGGAACA
GATCCCTGGAAGACCAAAAGATGACATTGAAGTCCGAACTAGCCTTCGTGTGGAGCGTTC
AAGTAGTCCTAGGTTGCCTCCAGGAAGATTGCCAGAGACTGTTCGGTTCTATTCGGGTGA
AAGGCCTCGTACTCATAACATTTACAGGTCTCCAGCTGAAGGACTTCCTTGGATGGATCA
TGCAGCTTTACTGGATAGCCTGGTGGAAAGTATATACACGAGAGGAGATAGAGAAAGTGA
GGATGGTGCTTATTCTGATGGTCCTGAAACAATGTCACCTACCGAATCCTTATCCTTGAA
CTGCAGTGTCAGTGGTCTGAGCGGACATCAAACTTCAGATTTGCAACCATCCGGAACCTT
TTCCATTGACTCCCAAACTAGAGACTTTATGATGAGTCGATTCTTGCCAGCAGCAAAAGC
TGTTGTGTTGGAGACTCCTCAATACGTTCATAAAAAACCAGTCTCTGCTGAACAACCGAT
GCCAGTCAAAAAGCTGGTCCCCGTGGAACGAAAACCTTTGGTTAAGCCATTGGAGTCTAA
CCCTGTCTCATATTATAGCAGCCATCCAGCTGATGTAGGAAGTGAAACTGAAGATGATGT
GCCTGAGAATCCGGACAAAAAGCCAAGTAAAGGGTGGAGATTTTTCCCTCGGATTTGTGT
GAAGAATTCTTTGTGCCTATTAAATCCACTGCCAGGATTGAAAGTGAAGACACGTGCTCC
GACACCCTCGCCTCAAGCAGTGAAGAGAGTTTCAGGAACGAAACCAAAGATGGCCCAGAG
TCCCACATCTTATGCTCATGAAGTCAAGAAATTAACTAGAAAAGCTTATAGTGGTCCTCT
TGAGAAGAATGCTTGTGATACCATTAATAAGCAAAGATTTCATTCTGGAGTACTGTCCCG
CGAGCTGTACAAAGCTGATAATAGAAGTATGTCCGGGCAGCTGTCTAATCCAAACGACTC
ATGTAAGCTAGTTGGAATCTCTCCTGGTAGGCGTTCAAGAAGTGGGGCTATATCTCCTTA
TCGAAATGTAGCACCCCCATCTCCATTCAATGAGGGTACAAGGTTTCTTGGTGTCCCAAA
GGAAATGGAGAGTCTTTGGGCTAGTCGCTTTGATTCATTCCGCAAAGGTTGCTACACTGT
CAAGGACAAAGCAGTACCACAGAGAATGGGCACAGGAAAGTTTTTTGATTCGCCAAGTGA
AGTAGTTGAGAAAACCTTGTACATAGATTCTGTAGATAATGTGCAAATTTCAGCCCCTAA
CGCTGCTTCTTTGAAACCCAAGGGAATAGTGAACTCCCCGGATAAGATTATGAAAACTCT
GGTTGAAAACAGAAAAGTGGTTGAAAACTTGGCTGCCATGTCTCCTATTCAAGGTGCCAG
GCGCTCAGATGTTTTAGAGAAAAATAGCAAACAGATTGTTGAAAAGGAGTCTTCCCTTGA
TTTGATTGAAGCTTCTACAATTTCCATATCAACACACAAAGGTCCTGCTGATCAAGAGTT
TTTGAAACTAGAGCAAAATGTTGATACAGTATCTGGAGCCTTAGAGTCTTCAAAAGTTCA
TCCTTGTGGGAATTTAGTTACAGAAAATGAAGATAACCAAAATGCAAAAGACTCAAAAGA
TTCTAACCTTACCTCCTTGGAATCTACTTTACCACCACCATTACCTAAATCTCCCTCTGA
GTCTTGGCTTTGGCGCACGCTGCCTTCCATTCCTTTGAGAACTCCATTCTTGAGTTTTAA
CTCTAAGAAGCAGAATCAGAAGTCCCAAACTGATGGTACCAAGTGGGAGACAATCGTGAA
AACTTCTAATTTGCATAAGGATCATGTCCGTTACTCTGAGGAACTATATACTCTTGGTTC
TTGTCAGCAGAGCAAATCTTGAAGATGGATCATTCATAAAGATGAAACATCTTGTTTCTT
TCGGTATAGCTTCAATGCTATCCTGAAACTACATTTCATTCCTCTTGGAATTTCCTTGTC
ACTATTTTAGTCTAGGTGTACGAGGAAATTTTTTTCCTATTCCACCTCAAAAAATTACTT
GGTTTTGATGGTGGCGATTGTTGTAATTTTCAATAGTGGCATAGTAGTGGGCATGAGAAT
TGCTGAGTTTTTTGTGTTCCTGAAAACCAGCCCTTGCCTTGAGATATGAATGAATGACAT
TTGATTCTATATGACATTCTGGTATAGTATTGTTTTTTCATAATGTGTGGCCTTGAAGTA
AATATCTTTAGCTTTTCTGGTAATATTTGAT
