Microarray Probes on PGSC0003DMT400026205
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_992_PI426222305 |
JHI_St_60k_v1 |
CTGTTTGTAATCTTCTTCACACTGTTGTCTCTACTTAAGATGAACTAATAACAACTGCAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026205
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026205 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g089650.2 |
+2 |
0.0 |
820 |
388/399 (97%) |
genomic_reference:SL2.50ch02 gene_region:45984452-45986300 transcript_region:SL2.50ch02:45984452..45986300+ functional_description:Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 |
| TAIR PP10 |
AT1G61600.1 |
+2 |
2e-95 |
299 |
175/426 (41%) |
Protein of unknown function (DUF1262) | chr1:22729816-22731182 FORWARD LENGTH=421 |
Transcript Sequence (1526 bp)
>PGSC0003DMT400026205 1526 pgsc_dm_v3.4
TAAGAAAACATTATAAAATATCATATATGGTATAAATAACTCCCAAGCCTAAAAATTAAG
CATAACATCAAACACTAGCACAAAATTAGCAAAGATGTTTGCCACAGCACCACGTTCTCT
GTACAGAAATTTCCCAAAAGCACTTACAAAATTTCCAACAAATCCACCAACAATTACAGG
GTATTTAGTATTAACTGATGAAGAATCAGAAGAAATGGACACTTTTTGTTGGGGCATTTG
TAAGCACAGCAGTATCACTAAGCTTCCATTTCCTCAAGACAGAGTGTTGAAAGTTGTTCA
TAATCCAGAGTTTGGTGAACCTAGTGTTCATAAAGTTTGGTTCTTGCCTGTTCTTGATCA
ACCAATAGCATCCGGCCGCTACTATGTTATCAAAGCCAAAGGCAGACATAAAGGGAGGGC
CTATACATCTTGGAAAGAAGCAGATATGGATAGTTGTTGCTTTGACAATTCGATGAACGA
TTTAAATCCAAAGCCTTTTAACCACAAAGATCCCTATCAACAATTCGAGATTTGTCCATA
TGATCTTGGTGGTTTCTATGCAAAATCTGTAGCCTACGATGGTGTTCCTCCGAAATTTCT
CAGGAAAAAAGGATGGCACGTTAATAGTATCCATTCACTTAAAGTCAATTTGAAAGAAGC
TCAAGGCCTCCAATTATCCTCTCAACCATCAGACTCAGATACCCCTGAATTAAACATCCA
AGCATCTTCCAAACGTTCTGTTCCGATAATTCTTGGCAAATGGTATAGTCCATGTGTGTT
AGTAAAAGAGAAGAAAATTAAAACTAAAGAACAGATGAATAAATCATTGTTTTATGAAGT
GACACTTAAGTGTTGGTGGGAGCAAATATTTTCTTGTGAGAATGTAACAAGAAGAAACAG
AGCACATGTGGAGGTGGACGCGCGTGTGAGGAAGTTGTTAACTTTAATAAGTGGGACGGA
AGCTGTGAAAGATGAAGAAGGGAGTGGCGCGTTTGTTTGGTTTAGAGTAAAAGAGGAATA
TAGAAATAAATGTACATTGGAGAAAGTTGGTTTGCATAGTGGTGTTATTGAGAAAATGAG
ATGGATACAAGAAAGAAGGGGATGGTTTGATGGAGGAGAAAGTGATGTAAGAGTAGAAGG
TATAGAAGAAATAGAAAGTGAGAATGGCTATTGGAGAAAGTTTAGTTGTTATGTTTTGGT
GGAGAGTTTTGTGTTTAGGAGAATGGATGGAAGTTTGTTAATTAACTTTAATTTCAAGAA
CACTCAGAAAATTGTCTGTCAATGGGAATGAGGATACCTGAAAAAAATACAATATGATGC
ATTAAGCTTCTGTTTTGAGTCTGGAGAAAGGCGTCGGACCACAAGAGGATATCTGCATGA
AATAAAGATGTTGAATTGGTTCATGTTAATGTGTTGCTAGCTTCCACTTCTATATGTATA
TATATTTTATTTATATATATAGACTTCTGTTTGTAATCTTCTTCACACTGTTGTCTCTAC
TTAAGATGAACTAATAACAACTGCAG
