Microarray Probes on PGSC0003DMT400026181
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1405_PI426222305 |
JHI_St_60k_v1 |
AAATACAAACTTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026181
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026181 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g089840.2 |
+3 |
1e-147 |
433 |
227/248 (92%) |
genomic_reference:SL2.50ch02 gene_region:46129231-46130747 transcript_region:SL2.50ch02:46129231..46130747+ functional_description:Transcription factor (AHRD V1 **-- D7MBD5_ARALY); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 |
| TAIR PP10 |
AT2G23790.1 |
+3 |
3e-54 |
191 |
88/135 (65%) |
Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336 |
Transcript Sequence (2090 bp)
>PGSC0003DMT400026181 2090 pgsc_dm_v3.4
CAATTTTAATCAATTCTCTTTATCTCAGAAAGCTTCTTCGTCTATCAATGGCGTTCAAAA
AAATTGTAGCCCAACGTCTTTTCGATTCATATAAAATTACTCGTCCTTCCCTAACAACAT
GCCGTATTTGTTCCTCAACCATGACCAAATCGATGGCTTCTCCTAATCCTGAAAGGATAG
CCCCAGATCCCGGCGAGGGTGCTTTTTTCCGTCGGTCTCTCCACCGAAGTTCTTTGTTCC
AGTCACTAGCAACCTCGTCGGAGCTCCGGTCTTTTCCCATCGGTGAAAAGCTCCGTCAGG
AATTGAGAGGGATGGACATTGGTAGAGATAGGATCAGACTCGATGGACTCATCTCACCGC
CGCAGCAGAAATCGTTGCCGGAGATGGAGTCAGAATTAGCCGAGGAGGAGAAATTTACGG
TGGCCGATGCAAAGAAGGTTATGAGATTGGCACAGCTTGAGGTGGTGAAATCGAGGCTAA
GGGAGATGGAGAATGACTGGATTTCGTATCCGGAATTTTTTCAGATCTGCAACGGCGCTT
CTTCAAACTCCGATCAAGCCCTAGAATTCGCAAAGATGCTCGATCAATCGGGAATTGTAA
TTGTTTTGGGAAACGTCGTATTCCTTAAGCCTGATAAGGAAAGCCAACAAAGTTATTCCA
GATCTCTAAAACGAGATGGTGACTTTTATAAGGGACTGCACCAGTTGGACCATTTCCAAA
CACCCAAAATTACACCATTGAACACCCTTTCCTCTTTTAAACTTAATTCCAAACATTTGG
GAAGAAGATGATGTTTGGCTTAAAAAGTTTTTTAGTTTTGCAATAACTAAAATTGTTATT
TACTGCAAAAAAACTTGAACCAAACGTAAGCTAATAGTTTGGGTGGGGATGGGATAAGAG
AAAGGAAAAAAGGACATTCAGGTTCAGTAGAGTCCAAAAATTAGTAAATCCTACCCCAGA
AAGAAACGAAATACAGCTATTCCCTTAGCTCCTCTAGTTGTCTTTTCTAATACTTGACGC
AAGTGACAATTTGCCTGCCTTGTCATAGGAATAGACACTGTTTTAGTTAAACAGATTCAG
AATTTTAAGTCTGTGTCTAAGTGCGTGCGTGGTTGTGTCTAATAATATAGATTAGTGAAT
CCAATTTAGATGAATGCTTGCAAATGGGAAGATGTTTCTCATTATGTGATAAGGCGTGTG
AAGTGGAGTTCTATTGTTTTACACAAGCATTTTGGTCCCTTGTTTTGTTGCTACAGGTGG
TGAAAGCCATGGAAGGCTTAATGCCAAGGCCTTTGGCTCAGCCAAATGACCCACAAATGA
TGAAGGAGTTTCAACAAATGGATGAGAAGAAATCAGCTATTGACAAGAAGGCAGAGTCGT
TGGTGCAAAGGGAGTTGTGGTGTGGGCTAGGATTCTTTGTGATTCAGACTGCAGCTTTCA
TGAGGCTCACTTTCTGGGAGCTAACATGGGATGTAATGGAGCCAATTTGCTTCTATGTTA
CATCCTTTTACTGCATGGCTGGTTATGCTTTCTTCCTAAGGACATCCAAAGAGCCTACTT
ATGAAGGCTTTTTCCACAGCCGGTTTAGCGCAAAACAAAAGAAGCTCATGAAGCTTCACA
ATTTTGATCTTCAGAGGTACAATGAACTCCGCAAAGCTTGTGATCCTCACTCGTCCATAC
CTACTGGAAACACTTTAACACTTCATTCAACACCCATGATGTCCACAGCATAGAATGTGG
TGATTTTACATGAACATGTTGTGCGTAAGATGGATATTTTTTAGGAATACTGCAAGAAAG
AGGAACCTAAAATTGGAAAGGACAGATGATATACTTTGCTAATTTTTTTTTCTTTTACTT
GTTTTACTTTTAAGTTAGTGTCGAATGGATACTTCGAGCTGATCCCAATTGATGTGGGAC
TGAGGCGTCGTTGTTGTTGTTTACTATTACTTTGGACCTAGACTAACTTTGAGTTTATCT
ATGTCACGGCTAATGTATATTAAGTGAAGAGGGCACAGAAAATTTATAGAAAATACAAAC
TTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG
