Microarray Probes on PGSC0003DMT400026096
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1168_PI426222305 |
JHI_St_60k_v1 |
CAGCTGGTAGAAACCAGTGAAACTAGAGCGGGAATATCAATTTTACAAACTATATTGAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026096
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400026096 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g090400.2 |
+1 |
0.0 |
649 |
333/372 (90%) |
genomic_reference:SL2.50ch02 gene_region:46542531-46544827 transcript_region:SL2.50ch02:46542531..46544827+ go_terms:GO:0003700 functional_description:Myb family transcription factor (AHRD V1 **-* D7LQI3_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class |
| TAIR PP10 |
AT4G37180.2 |
+1 |
3e-55 |
191 |
127/343 (37%) |
Homeodomain-like superfamily protein | chr4:17504648-17506107 FORWARD LENGTH=363 |
Transcript Sequence (1425 bp)
>PGSC0003DMT400026096 1425 pgsc_dm_v3.4
GAAAGTAATAGAACAATTAAATATATTTGCAGAAAAAAAGTTAAAATTATGGGTTCAAAT
TCTAAAGAAATGAACATTGATTTGAATTTTGTTTATGTGCCCAAGTTAATTTCAGATGTT
TTAACTGAAGTTTCTGCCATGGATGACATCTCCAAGAAATTAACAAAGCTCAATCAGTTT
CTTGTTCCTTTAGAAGAAGAACTCAGAAAAACCGAAGCTTTTAAACGTGAATTGCCCATG
TGTATGCTTCTTCTCAAAGATGCTATTGAGAGATTAAAGGCAGAAGCTTTGCTGTATAAG
GAGAAAGATAAAAGTCCTGTGATGGAGGAATTCATCCCACTGAAGAAGGGTAATTCTGAT
GAAAGTGGAAGGGTAAAAAAGTCAAATGATTTAAGTGATAAGAAAAACTGGATGAGCTCT
GCTCAGCTATGGAGCACTCCAGTTCAGTACGAAAGCTTAAAATCGAGTGGTGTAGAAGAG
AAAGCCAGGGAGAAGCAGTACCAGTTAGGAGCATGTAAATTGAAGAATGAAAGAGGGGCA
TTTTTGCCATTTCAAGGACAAGCTTTGAAGGAAGGAAAAAATGGTTTGGCAGTGAAGGAT
TTATCTCTGTCAATGGCAGTGACAGTGGGTGAAGGAGAAAAGGGTCAAAAGCCAATTGAT
GTGAGTGTGAAAAGAGAAAACGGGCCATCAAATTCAAATGGATGTGGTGTTTTTTCACAG
GACAAATCACAACACAGGAAACAGAGGCGTTGTTGGTCTCCAGAATTGCATCGTAGATTT
GTTGATGCTCTTCATCAACTTGGAGGTGCACAAGTGGCTACACCAAAACAGATCAGAGAT
ATCATGCAAGTGGATGGCCTGACCAATGATGAAGTGAAAAGCCATTTACAGAAATATAGA
CTTCATGTGCGACGAGTCCCAGCATCAGGTTGTTCATGGTCTAATATGGATGAAATTGGG
GAGTCTTCAAAGACAAATGGTACACAATCTGGTTCTCCTGAAGGGCCTCTTCATTTTACT
GGTTCGGGTTCAGCCAAAGGGGTGTCTATCAATGAAGAAGAGGATAATAAATCTGAAAGC
TATAATTGGAATGGACAGCTTCAAAAGAGCATTGAAGGGTCAACTATAAGATCAAGTAGC
CATTAATTTTGCAGCTATAGAAATAGGACAGAAACAAAACATAACAAATAACTTATGAGA
GAAGTACCGATGAGTTCTTTCTGAAAAATAGGAAATAGGGACTCTGCTGATTTTAACATG
TTTGTTTGTGAAATCAGATTTAATTAACTTTGACATCGTTGATTTACAATACATTGCGAG
TAGGACTAATGATTTGGATATATAGTCTGATACTAATACAGCTGGTAGAAACCAGTGAAA
CTAGAGCGGGAATATCAATTTTACAAACTATATTGAATATTTATC
