Microarray Probes on PGSC0003DMT400025824
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_7883_PI426222305 |
JHI_St_60k_v1 |
ATGACAAGCTGGTTTGTTTTCAAACAAGGTTGATGTTGAATGTTGGTAGTTGGCAAATTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400025824
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400025824 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G42430.1 |
+2 |
2e-177 |
501 |
218/239 (91%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:15891512-15894322 FORWARD LENGTH=426 |
Transcript Sequence (924 bp)
>PGSC0003DMT400025824 924 pgsc_dm_v3.4
GATTTGTTGATCTCCTTGACAGTGGTGGGAGAAAAGTGATTGGACCGGATACAAAGAACT
CGGTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCATGGTGGGAAACATGGCGGGA
AGTTCTTCACCAAGATGAATGGAGTAATCTTGCTAGGATTGAAAGGAGTGCACAAAAACA
AGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTGGTGGGAAAAGTATGATGC
AAAGGGTTGGACAGAGAAAGGGGCACACAAGTATGGCAGATTAAATGAACAATCGTGGTG
GGAGAAATGGGGAGAGCATTATGATGGAAGAGGATCTGTTCTTAAATGGACAGATAAGTG
GGCAGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGG
AATTGGTTCACGGCAAGGAGAGACTTGGCATGTGTCACCCGTCGGTGATAGATGGTCCAG
GACATGGGGAGAGGAGCACTTCGGAAATGGCAAAGTGCACAAGTACGGCAAGAGCACAAC
AGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGAGGCTGAACCTCACTA
TGGATGGGCAGATGTTGTAGGCGATTCTTCCCAGTTATTGTCAATCCAACCTCGAGACAG
ACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTT
TCCTCCCACCTTGTCACAATGACAAGCTGGTTTGTTTTCAAACAAGGTTGATGTTGAATG
TTGGTAGTTGGCAAATTTTTAGATTTTGATTGTTATTGCCAATTCTCAATGTAACAAAAC
ATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAAATCATTTTTGCATCGGGT
TTAATGCACTCTCTACCATATATG
