Microarray Probes on PGSC0003DMT400025109
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_44442_PI426222305 |
JHI_St_60k_v1 |
TGGGGGTATGGAGAATTGTGCAATTCTTCTCATTGACATATGTTAATACCTTTGAGATCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400025109
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400025109 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G57950.1 |
+2 |
2e-37 |
134 |
76/150 (51%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21460423-21460968 FORWARD LENGTH=181 |
Transcript Sequence (941 bp)
>PGSC0003DMT400025109 941 pgsc_dm_v3.4
AAAAAGTGTTAGAAAAATCTGCAAAGTGGTTGACACTTTCTATAAATTACCTACTTACTA
GTGATAAATTGGTACTGAAAGACCCTTCATATATCCCATTAGAACAAGGCACATTACACA
TCCAAAGAAAAGAAAATACAAAAAAATGGTTTGCCCCTCTCATCCAAAAACTTCCCTGAA
ATCATCATCTACTAGCTTAAATTCTATGAAGCTGAAGAGCCTAGTACAATCCTTCATATT
CTCCCATGTATACCGAGCTATAGCGAAAGCGAAATCATTATTAATTCAAATTATGAAGAA
TGTTCAGTTAGTTCATCAGAACAAGAAGAAGAATAATGTGAAGTTGTTTCTTGGTTCATT
TAGATTGCATTATAATTGGTGTTCTTCTCATGTGATGCCAGTGCCTGTTCCAACTGCATT
TGATGTTTATTATGATTCTACATGGAATTCTATTATATCTACTGCTTGTGATGAGTCAGA
ACTCTCTGGCTATCTTCAATGGCTTGAAGACAAGGACAATAGTAATAATGATATTGATAA
GCTTGCTGATATGTTCATTGCAAATTCTCATGAAAGGTTTAGGTTGGAGAAAGTTGAATC
TTATAGGAGATTTCAAGAAATGTTGGCTAGAAGTGTATGATCCAATATTATTTTAGTGGT
TGGTGTTGTATGTTTTGATAATTTTCTCATATTTTGGAAGGTGCATGGACTTCTTTTTAT
TTTTTTTATTTTAAAATTTAGAGAGGTAGGTCTTGTGGGATTATATAACCATAGAATATG
GAGTAAAGAGAAGGAAAATCTCTTGGCTAGATGGGGGTATGGAGAATTGTGCAATTCTTC
TCATTGACATATGTTAATACCTTTGAGATCTGAAATTTATTACAATCCTTCTACTATATC
AACAATTTCAATCAATTTCTATTTGAGAGGTTTCCTTGTTT
