Microarray Probes on PGSC0003DMT400024250
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_415_PI426222305 |
JHI_St_60k_v1 |
CTGTGCTCTCTTATGCTGTCAAATTTTCTTCACTAATCTGGGTTTTGTATTTTGGGATTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400024250
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400024250 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc04g076220.2 |
+1 |
9e-143 |
416 |
288/345 (83%) |
genomic_reference:SL2.50ch04 gene_region:58757542-58758976 transcript_region:SL2.50ch04:58757542..58758976+ functional_description:AT-hook motif nuclear localized protein 17 (AHRD V1 **-- Q9LTA2_ARATH); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding |
| TAIR PP10 |
AT5G49700.1 |
+1 |
4e-63 |
209 |
113/201 (56%) |
Predicted AT-hook DNA-binding family protein | chr5:20192599-20193429 FORWARD LENGTH=276 |
Transcript Sequence (1407 bp)
>PGSC0003DMT400024250 1407 pgsc_dm_v3.4
TTGTTATTATAATATATTTGATTTTGCCCATACCTACAATCCAATCATCTACACTACTAC
ACCCACAACTATCTTATTCATCTTCATTATCATATTATAAAGAAAGTATAATTTTAATTT
CTTTTTTATCAAATGAAAAGAGAGTATGTACTAGAAGAAAAAAATAAAAATAAAGATCAT
TCTAGTAACACAAACACTATGTTTGGTAAACTTCATCATCACCAAAATCAATCTCCTCAA
CATTTTCAACACCATCACCAACAACAACAACAGCAGCACCTTCAGCAGCACCAGCACCAG
CATCAGCAGCATAATTTTCACCATCCAGCTTTTCAACTAACACGCGAATGCCAAACTTCA
GAGGAAGCAGACAGTACTACTCATCGAATGAGTCCTACAAACAGAAACGATACTTTAAAC
CCTCAACCGGTTAATGCAGTAGCACCGCCGCCGCCGCCGCAGCAGCCACCTTCCTCCGCC
GGTAACGACGGTGCTACGATTGAAGTTGTTCGCCGTCCCCGCGGCCGTCCGCCTGGTTCG
AAAAACAAACCTAAACCACCTGTTATAATTACTCGTGATGCTGAGCCATCTATGAGTCCT
TATATACTTGAAATTCCAACTGGAGTTGATATAATCAACTCTATTACCAAGTTCTGTAGA
AAACGGAATATGGGTCTTTGTGTTCTTAACGGTTCAGGTACTGTAACGAATGTTACTCTC
CGGCAACCGTCAACTACACCGGTTTCGACTGTTACCTTTCATGGCAGATTCGATATACTG
TCAATTTCAGCAACAGTTGTTCAACCAAATGCGAGTGTTCCATCGAACAATGGGATAGCA
AATGGGTTCACAATTTCATTAGCAGGTCCACAAGGTCAAGTTGTGGGCGGTGGCGTAATC
GGACCTCTTGTTACCGCCGGGACGGTTTACTTAATCGCTGCAACTTTTAACGGTCCGTCT
TATCATCAGTTACCGGCGGAGGAGGAATTAGCAAGGAATAATTCTGGTGGTGGAAATGAA
GACGGGTCGCCGCCGCCGCATGCGGAGGTTTCCGGTGGAGGAGATAGTGGACATCCACCG
TCAACGACGGCGCCGGAAACTTGTGGGATGTCGATATACAGCTGTCATTTACCGTCGGAT
GTGATATGGGCACCTACTGCTAGACAACCACAACCACCACCTCCACCACCTTACTAAAAT
TCTTGGAATCTGTGCTCTCTTATGCTGTCAAATTTTCTTCACTAATCTGGGTTTTGTATT
TTGGGATTAATATTTTTTTTCTTGTTTTTTGTTTAGTTTATTTAGTTGACTTTAGTTTAT
TTTTGTATCTTTTATGTTAATTAAAAAAATGTACTGTGGATTAGTCCTTTTTTTATTTGT
TGTTTATCTTTGGTTGGGAAAGAGGAG
