Microarray Probes on PGSC0003DMT400024237
Probe ID | Chip | Probe Sequence |
---|
CUST_249_PI426222305 |
JHI_St_60k_v1 |
GTTGCAATAATATGCCTCTGCTGTTTATTGGTGATGTTTTTCTTCCCTGCTTCCTCTCTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400024237
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400024237 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) |
Solyc04g076340.2 |
+3 |
5e-96 |
290 |
156/171 (91%) |
genomic_reference:SL2.50ch04 gene_region:58850229-58852842 transcript_region:SL2.50ch04:58850229..58852842+ functional_description:Unknown Protein (AHRD V1) |
TAIR PP10 |
AT4G38060.2 |
+3 |
9e-16 |
75 |
41/88 (47%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17873709-17874379 REVERSE LENGTH=136 |
Transcript Sequence (1409 bp)
>PGSC0003DMT400024237 1409 pgsc_dm_v3.4
CTTAAGCATAACATGCCTGTTTTAATGTTTGTTTGCCATCAATTTCATTGTGTTCATTTT
CTTACCTTATCTGTCTTGGTATAGGAACAAATCACTCATTTAGTTTTTCATTGAGGTTCC
AGAATCTTGATACATCTGTCTGACTCTGTGTCCGGTGCCTGCATTGGATAAGTTCCTGGA
TATAGGAAGATATGGCCATGACATTTACCCCCTTGTCATGGTTGCTTTGGAGTGGAAAAC
ATCAAGAACCCAAAATCTCTAATGGTTCCTCTTTAAATTCATCACCTGATTCGTTATTGT
GGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATCGCTTCCTCATCAA
GAAGGGTTAAGCGAAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATA
TTGTTATTGTGCCATCAGATGGTGGATGTGTTTCAGGGTCTGAGTCTGAGGATTCAGATT
GGTCAGTTGGATGGCTGGAGCCTCATGGACCTGGATTCAATAGTGATGATGATTTAGATG
ATAGCTTTGCTGTGCTTGTTCCCTGCTATGGCTATGGTTGTGCAAATGTGGAAGAAAATG
CACAAGATAAGTTTCTGCAAGCCATCGCAAACTTGAAGGACATATATGCTACTGAGAATA
AGAAGTATATGGAGCACTGGGTCTCATCTCTGAGGAATCACTGAAATCCAGCAGCGCCTA
TGGTGCTGATCAAAACTTGTTTTCTGCTGCTTATCATGATTCTATGTTGCAGTGGATCAA
ACTTGAGCTGTTATGGTTACTCACTACAAACTTAGATATGAACTCTATAGAAATATAAAG
ATATGATATCCTAAAACAAACAAAAAAATGTCTGGAAATAATGTATATTTGTAGAAAGAG
GAGTGAGTTTGAAGGACGCTAATATTTGAGGAGAAGAAATAGCAGACGATATAGGCATCT
GCTGCTTCCTATCCACTCTCAAAAAGAAAAGAAAAAAAGAAAAAACAAGAAAAAGGAACC
TCCCTTTCATATTTCGTGGATATTCTGGTATTTGATCTCCAGAATTGTCTCCGAAGATGT
GACCTCTGCTTGCAATGCTTCTTCATGAACATTGGTGTAAGTTTTCGATGTAAAGTGACT
GGAAGGAGACAGAAAGAAATGGATGATGGAGGACACAAAATTCTTAAGAAGAGGGAAAGG
CACAGCTGTGTGTTATGCTTGATCATTCTTTGATGTAAATATCTGTGAATATGTAAATAT
GTTCATCTAGTTGTAAATACGTCGCGTGAAGTTTGATAATCTTCATAAGTACTGTAAATA
ATTGTAAAACTCAGACAGCATTAGTTGCAATAATATGCCTCTGCTGTTTATTGGTGATGT
TTTTCTTCCCTGCTTCCTCTCTATATCCC