Microarray Probes on PGSC0003DMT400024176
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_276_PI426222305 |
JHI_St_60k_v1 |
GCAATACAATTGTTTTGTTGTACCATACACTCCAGCAGAGTTTTGGAGTATTATTTGACT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400024176
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400024176 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc04g076300.2 |
+3 |
0.0 |
1164 |
629/669 (94%) |
genomic_reference:SL2.50ch04 gene_region:58808337-58816333 transcript_region:SL2.50ch04:58808337..58816333- go_terms:GO:0005216 functional_description:Transporter small conductance mechanosensitive ion channel (MscS) family (AHRD V1 *-** A7ZLG1_ECO24); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS |
| TAIR PP10 |
AT1G58200.1 |
+3 |
0.0 |
639 |
362/622 (58%) |
MSCS-like 3 | chr1:21548370-21552488 REVERSE LENGTH=678 |
Transcript Sequence (2399 bp)
>PGSC0003DMT400024176 2399 pgsc_dm_v3.4
GGAGCATCTGCTGCAATTATTCTACAAAACTCTCTCTTAAACTATATTATAAGTCGTGGT
TGTAGATTCATTGATAATTTTTACTGTCTCATTGACACTTGATATGTGGTGTACTGCATC
TTCAGCGGCAGGATCCTTGGAGCATCTACCTTCTGAATACTGTACACAGGCCTTTATTTT
TCCATCCTTCACCAACTAGATGTAATGTATTACTATGCCGCTCCTTGCTAAAGCCAGGTG
GAGGATATGAGAGTCAAGTTCTGGAAACAGCAACACTAATTTGGAAACGGTCATTAAGTA
CTATACATGGAAGCCCACTTGTGCTTCAGCTGATTCCGGCCATTGGTGTTCTTGTTTTTG
CTGCATGGGGTCTCACTCCACTGATGCACTTTGGAAGAAAGCTTTTCCTTCATGAAAGTG
ATAGCAATTGGAAACAAAGTAGCTGGCATTATGTTACAACTTCCTATCTTAAACCCGTGC
TTTTATGGACTGGAGCAATACTTATATGCAGAGCAATAGATCCACTGGTTCTACCTACAG
TTCCTAGCCAGGCAGTCAAGCAAAGATTTCTTAATTTTATACGATCATTATCGACAGTGA
TGGCACTTGCCTACTGTTTATCTAGCTTGATTCAGCAAACACAAAAATTCCTCGTGGAGA
CAAAAGACCCTGCTGATGCAAGAAATATGGGGTTCGAATTTGCAGGGAAAGCTGTATATA
CTGCAGTATGGGTTGCAGCCGTTTCATTGTTCATGGAATTGCTTGGTTTTTCTACACAGA
AGTGGCTGACAGCTGGGGGTCTTGGGACAGTATTGCTCACTCTTGCTGGTCGTGAGATAC
TTACAAACTTCCTCTCGAGCATAATGATCCATGCAACAAGGCCCTTTGTTCTAAATGACT
GGATACAGACTAAGATACAGGGATATGATGTCTCTGGTACAGTGGAGCACGTAGGTTGGT
GGTCACCAACAGTCATAAGAGGTGATGATCGTGAAGCAATTCACATACCAAATCACAAAT
TTTCAGTGAATATCGTCAGGAATCTTACTCAGAGGACTCACTGGCGGATCAAGACTCACC
TTGCCATCAGCCACTTGGATGTGAATAAGATCAATAACATTGTTGCGGATATGCGGAAGG
TTTTGGCGAAACATCCTCTAGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATA
ACGTTGATCCAGAGAATCAGGCTCTTAAGATATTGATTTCTTGCTTTGTGAAGACTCCTC
GTTTTGAAGAGTACCTCCGAGTGAAGGAAGTTATATTGCTGGATCTCCTTCGAGTAATCA
GCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGTGAGA
TTGATGTGGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCC
AAGTCCTCCTTATTGAGCCTTCTTATAAGATCAGTAGTGACGATAAAGCCAAAGCTTCTG
CTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCACCAAGTACATCAC
GGGGCGCTGATGACACAAATGACAAGCCATCAACTCTTGTTGAGAAGGAAGTCGTTAAGG
CCTCATCAGCATCAAATGCTAATGGTGATTTAAAAGCAGCAACTTCGCCATCAGATGGAA
AATCACTAAAACAAGGATCTGCCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAATTG
CTTCAGTTGCTGGAGACCCACCGGGGTTGACATCAGATACAGCCATTGAGAAGACAGATA
TGGCATCTTCTGCTTCACAGGCACAACAAGATACTGAAAGACCAATTTCTTCACCACCTT
CAGTTGGAAGGCCCATGTTAGAAGACAACATTGTTCTTGGTGTTGCACTGGAAGGGTCAA
AACTAACACTTCCAATTGAGGAAGAAACGACTCCACCCTCTCCCTCTCCAACATTTTTTG
ACTCAGAATCAAAAGAGTTAGCTGCCTGCCGGAATGGAAATAGCTCGACCAACTCAAACA
AAGATAAGACGGACGATAAAATGCCAGGAGCTCCAAGCACACAAAGTACATCAAATGACC
AGAAAGAACGCGAAAGGTGATTATTTGAAGGTTCAACAATGTGCAATAATGCGCTAAGGC
TATTTTTTAGAGCTTGCATTGTGCACACTGTAAATGTTTCTCATGAAATTTATTATATAT
AATTGTGGAGCAGTAGTTGGCTTGTATTTAGCATTTGGTAATGATCAATGAAGGCACAAT
AAATACCACTAACTTTTAGCTTAAGGCTTGGTCTGACCATACACCATCTTTAGCTTGCAA
TACAATTGTTTTGTTGTACCATACACTCCAGCAGAGTTTTGGAGTATTATTTGACTACA
