Microarray Probes on PGSC0003DMT400023552
Probe ID | Chip | Probe Sequence |
---|
CUST_22213_PI426222305 |
JHI_St_60k_v1 |
CCTTCTGAAATTCAACACTTTGAAGATTTCTATTGCTCACATGAACCAAATGCATCAATG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400023552
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400023552 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G53420.1 |
+3 |
4e-67 |
219 |
139/279 (50%) |
CCT motif family protein | chr5:21673683-21675469 FORWARD LENGTH=264 |
Transcript Sequence (1436 bp)
>PGSC0003DMT400023552 1436 pgsc_dm_v3.4
CAAAAACAGATTCTTTTTTCAACCCCTCCTTTTTACTCTCTCTCTCTCTATTTCGTTACG
GCTGTTTATGTTTCTGCTCTTTGCTACTACTGCTTTTGTTTTTTGCTCTGTTTTTGACAA
CTATAAATGCCCCTTTTCCTTCATTGAACAACCTCCTTATTCATTCAATTCACACATAAA
GGGTTTTTAAGCTTTTTTTGTTTGTCAAGAGACTCAACTGTGGAACAAAAATGTATGCTG
AGACTGGGTTAATGTACCCTTACTTTCAGACGTACCCTTCTGAAATTCAACACTTTGAAG
ATTTCTATTGCTCACATGAACCAAATGCATCAATGGGATCAACCATATCAGAGTATGACC
TCGGGGGAGAAGGGGATCTCTTTAAAGCTCCACAACCATTTCTTGAACAACCATTGATGG
GCCTTGATCCTATGACTGCTGCTATTTCTATGATATCTTGTTCGGAAGATGCCATCACCC
CCCAAGGACTCAAAGTTTTGGATCTAGAAACTTCATTTGAGAATGAACAACTCCTGAGTG
AAGTTTTCTATGAATGCAAAAAAGATCTATTTGAAAAAGATGCAATTGATATACCGCTCT
CTGAAGTCTTGGACATGAAATTTCCTATTGTGAAGGCTGATGGAAGCCTTACTGCAGATG
AAAACTTGGTTTCTGAGGGATCCTTCCAGAAAAGTATTAGTTCAGGGTGTCTAAGCTCCA
TGGAGTGGATACATGGGGCTCCAATGAGGCCAAATTTTATAGATTTTGGTGGAATGGACT
TCGGAGCTGTTTATGGTATGCGACGATCATTCAGTGAAGGAGACATAAAGACTCTGGGCA
ATGGCAACATAAATGTGATCCATTCTCCACGGGGTCAACCACAGATTTGTGGAACTTCCA
CTTCTGATGTTCGCAAGGAACAGCTCTCCAGATACAGGAATAAGAAGAACAAAAGGAATT
TTGGCAGAAAAATTAAGTATGCTTGCAGGAAGGCATTGGCTGATAGTCAACCAAGGATCC
GTGGAAGGTTTGCAAAAACTGAAGAAATGGATATATCGAAGAAGCATTAACTGTTAACTG
TGGAAGAAATATATAGTAAGGTAGTAATGGGACTGCTGATATTAGCTTTAGAATAGGATC
TGCTCAAATAAGCTGGGGATCCATCCAACATGTTGCAAGTTTGTTAAATCTTTGGGTAGT
GGCAATAATATTTGTAGATTAGATAAACCAACTAGTCTTGTATATAGTGTTTGTTAAATA
AAACTCAGTAACTTGTTATTATTAATATGCTTTCCTTTACAACTACTCTTATTAATGTTG
TAAAACTCAGCAACTCCTCCCCACCCCACAACACCACCAACAATATTTACACTCAAACTC
CAAACTAGTTGGTGTGTATTATATGAATCATCACTATTTTATTTTTTGAAAAATTG