Microarray Probes on PGSC0003DMT400022528

Probe IDChipProbe Sequence
CUST_136_PI426222305 JHI_St_60k_v1 GTTTGGTTCGATTTCATGAATTTTGATGATGTAGAATAATTGGACGGATTGAGTTCTGAC

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400022528

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Source Transcript PGSC0003DMT400022528 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc01g057080.1 +2 5e-73 219 109/116 (94%) evidence_code:10F0H1E0IEG genomic_reference:SL2.50ch01 gene_region:51195128-51195469 transcript_region:SL2.50ch01:51195128..51195469- go_terms:GO:0003677 functional_description:Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding
TAIR PP10 AT1G71520.1 +2 2e-37 129 64/126 (51%) Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143

Transcript Sequence (559 bp)

>PGSC0003DMT400022528 559 pgsc_dm_v3.4
CAACAGTCAGCAAGCATAAGAGTAATTAGGAAGAAAGATGAGTTCAGGTGCAAAATACAG
AGGGATTCGGAGGAGAAAATGGGGGAAATGGGTGTCGGAAATTCGAGTTCCAGGTAGTAG
TGAACGGCTTTGGCTAGGTACTTACACTAGCCCTGAAGCTGCAGCTATAGCACATGACAT
TGCCTATTATTGTCTCCGTCCAGAATCATCGTCTTTACATAAATTAAACTTCCCTTCCAT
GTTACCGCCTAATGTTCAACCTGGAATGTCACCAACATCTGTACAAAAAGTTGCCTCTGA
TGCTGCCATGGCTATTGATGCTCAGTTTCTTACAATACCAACACCTGCTCAACAACATCG
TCAAACTGCTGATAATTATGGGCAAAATCAAGGTCTCAACATTTCTGTTGAAGATTATCA
ATATTGATGTGTGACGCACAACACAACTTTACTCAATCAATTTTTAATACCTTTTTTGCT
TGTACATGTACTCAAGTTTGGTTCGATTTCATGAATTTTGATGATGTAGAATAATTGGAC
GGATTGAGTTCTGACACAA