Microarray Probes on PGSC0003DMT400022528
Probe ID | Chip | Probe Sequence |
---|
CUST_136_PI426222305 |
JHI_St_60k_v1 |
GTTTGGTTCGATTTCATGAATTTTGATGATGTAGAATAATTGGACGGATTGAGTTCTGAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400022528
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400022528 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) |
Solyc01g057080.1 |
+2 |
5e-73 |
219 |
109/116 (94%) |
evidence_code:10F0H1E0IEG genomic_reference:SL2.50ch01 gene_region:51195128-51195469 transcript_region:SL2.50ch01:51195128..51195469- go_terms:GO:0003677 functional_description:Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding |
TAIR PP10 |
AT1G71520.1 |
+2 |
2e-37 |
129 |
64/126 (51%) |
Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143 |
Transcript Sequence (559 bp)
>PGSC0003DMT400022528 559 pgsc_dm_v3.4
CAACAGTCAGCAAGCATAAGAGTAATTAGGAAGAAAGATGAGTTCAGGTGCAAAATACAG
AGGGATTCGGAGGAGAAAATGGGGGAAATGGGTGTCGGAAATTCGAGTTCCAGGTAGTAG
TGAACGGCTTTGGCTAGGTACTTACACTAGCCCTGAAGCTGCAGCTATAGCACATGACAT
TGCCTATTATTGTCTCCGTCCAGAATCATCGTCTTTACATAAATTAAACTTCCCTTCCAT
GTTACCGCCTAATGTTCAACCTGGAATGTCACCAACATCTGTACAAAAAGTTGCCTCTGA
TGCTGCCATGGCTATTGATGCTCAGTTTCTTACAATACCAACACCTGCTCAACAACATCG
TCAAACTGCTGATAATTATGGGCAAAATCAAGGTCTCAACATTTCTGTTGAAGATTATCA
ATATTGATGTGTGACGCACAACACAACTTTACTCAATCAATTTTTAATACCTTTTTTGCT
TGTACATGTACTCAAGTTTGGTTCGATTTCATGAATTTTGATGATGTAGAATAATTGGAC
GGATTGAGTTCTGACACAA