Microarray Probes on PGSC0003DMT400021824
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1693_PI426222305 |
JHI_St_60k_v1 |
GCCTTATCTTGGGTTGGCCAAGAAAGTATATTATCTGTATTCTGGATTCTGAAATGATTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400021824
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400021824 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc06g051400.2 |
+3 |
0.0 |
861 |
417/436 (96%) |
genomic_reference:SL2.50ch06 gene_region:31251815-31254230 transcript_region:SL2.50ch06:31251815..31254230+ go_terms:GO:0042389 functional_description:Omega-3 fatty acid desaturase (AHRD V1 **** Q7X7I9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 |
| TAIR PP10 |
AT5G05580.1 |
+3 |
0.0 |
668 |
331/438 (76%) |
fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435 |
Transcript Sequence (1749 bp)
>PGSC0003DMT400021824 1749 pgsc_dm_v3.4
GAAGAGATAAGAGTAACAAGAAGCACAAGTTGAGATTTCTGTAGTCTAAGGAGAGACACA
CATCTTATTACTCCTTAGCCTAAAACAAACAAAGAAATATAGTACTAGTATAATTTTAAT
TTGAAACTCTCTATATTCAGATTGCAGACTTCACCTAACCCAATATCTCTCTTTTTATTT
CTCTTCTTCTCCCAAAAATGGCAAGTTGGGTTCTATCAGAATGTGGTCTTAGACCACTAC
CAAGAATATACCCAAAGCCCAGAATAGGGTTATCTTCCGTTTGCGCCACCAATTTAAATC
TGAGAAGAATTTCACCTTCACCTATACGAACAGATCGGAATTGTTGGGCATTGAGGGTAA
GTGCACCGCTTAGGATCCAAATTGCCGGAGAAGAAGAGGAACAAACAACAAACAATGGGG
ATGAGTTTTTTGACCCAGGGGCATCACCACCCTTCAGGCTTTCTGATATTAAGGCAGCTA
TTCCTAAGCATTGTTGGGTCAAAAATCCATGGACATCCATGAGTTATGTTGTTAGAGATG
TAGCTATTGTGTTTGGGTTAGCGGCTGCTGCTGCTTATTTCAACAATTGGCTTGTTTGGC
CTCTTTATTGGTTTGCTCAGAGTACAATGTTTTGGGCTCTCTTTGTTCTGGGTCATGATT
GTGGACATGGAAGCTTTTCAAATAACCATAACTTGAATAGCGTTGCTGGACATATCCTTC
ATTCTTCAATTCTTGTTCCTTATCATGGATGGAGAATAAGCCACAGAACTCATCATCAGA
ACCATGGACATGTTGAGAATGATGAATCATGGCATCCTTTATCTGAGAAGCTTTACAATA
GTTTGGATGATATCACAAAGAAATTTAGGTTCACTCTACCCTTTCCCTTGCTGGCATATC
CTTTCTATCTGTGGGGTAGAAGCCCGGGAAAGAAAGGTTCTCACTTTGATCCAAGCAGTG
ATTTGTTTGTCGCAAGTGAAAAGAAAGACGTGATCACTTCAACTGTCTGCTGGACGGCAA
TGGCTGCATTGCTTGTGGGATTGTCCTTTGTCATGGGTCCTCTCCAAGTTCTTAAGCTTT
ATGGCATCCCCTATTGGGGCTTTGTCATGTGGCTGGATATAGTTACCTATTTGCATCACC
ATGGCCATGAAGATAAAGTTCCTTGGTACAGAGGAGAGGAATGGAGTTATCTGAGAGGAG
GGCTTACAACGCTTGATCGTGACTATGGATGGATTAACAACATCCACCATGACATAGGGA
CTCATGTGATACATCATCTCTTCCCTCAAATCCCACACTATCATTTGGTAGAAGCAACGG
AAGCTGCTAAACCAGTGTTAGGGAAATATTATAAGGAGCCAAAGAAGTCAGGGCCTCTAC
CATTTTACTTGTTGGGATATCTGATAAAAAGCATGAAGGAGGATCACTTTGTGAGTGACA
CAGGGAATGTAGTATATTATCAAACTGATCCCAACCTTTATGGGTCTGAGAAATAGCAAA
ACCCTGTTAGCTGATTCTTTTTCACTAACACTATGGCCATGCCCCATCCATTCAAGTTGG
TTGTATAAGCACTACTGGTTGAGCACAAAGTAAAGTTAGCTACATGCCATTAGAAAAGAG
CAAGTTTCAATTATTGTCTTCAGGGCCTTATCTTGGGTTGGCCAAGAAAGTATATTATCT
GTATTCTGGATTCTGAAATGATTATTTACAAAAAGATACTTCAGTCCCACTATCTTTTAT
TGTTTTTTT
