Microarray Probes on PGSC0003DMT400017696
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_13641_PI426222305 |
JHI_St_60k_v1 |
CTATGATATGTCGTCACTAGTTTTTGTAAGACGTGTTGATTAAACCGACATTGGTTTGTT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400017696
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400017696 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G54160.1 |
+3 |
9e-09 |
56 |
24/27 (89%) |
nuclear factor Y, subunit A5 | chr1:20217581-20218706 REVERSE LENGTH=308 |
Transcript Sequence (1136 bp)
>PGSC0003DMT400017696 1136 pgsc_dm_v3.4
ATGTGAAAGTCCTGTGATACTGTGCAAAAGGTGGCTTTTTACAAGTACTATAACTATCTT
ATATACACTGAGCAGAACATTAGATCAACAATTCTGTATGTAGATTGCTGCAGTTTCTAA
GAACTTCTGTATGCAGATTGCTGCATTTTGGCGTTTAGTGCCTATGATATGTCGTCACTA
GTTTTTGTAAGACGTGTTGATTAAACCGACATTGGTTTGTTTGTATTTGTTAGCCATATT
TGCATGAATCTCGGCATCAGCACGCTATGAGAAGGGCAAGGGGATCTGGGGGCCGCTTTC
TGAATACTAAAAAGGGCAATGACATGGACTGTACACCAGAGGAGACGAAAAAATATGGGG
CAACCATTCCAACTCACTCTGGCAACTCGTCAGGTTCCGGGAGTTCTGATCAAGGGGGAA
AGGAAGGATCTACAGTTCAAGACATGCACAAAGGACACAGCCACAGTTTCGCAACTGGCA
ATGGCCATGGTTCATCTGTGTATTTTGCCCAGAGCACTGGAAGTGAGCAAGGGAATGGCC
ACTACGGTCGCGGAAGTTGGAACCTGCTGGTCAATCAGGCTTCTCAGGGGGCAGCTTCCA
GCAATTAAGAAGCTACACTCCACTGATGGAGGGGTCAGCCCAGCATTTTCTTGTGCCATG
GGTCCATTTCTTGCATCGTTCATGCAGGCAATGCTGAACATACATGCAAGGTGGCATGGG
GCTATGCTCAGGCAATTCATTCTTGGCTTGGTTACTTGTACTATATGAGCGTCGATGAGG
AAGAGAATAGCATATGGCGAGTATGATACGTTACAAATTCGCCATTTATTTGTCTTTCCT
CTCACCCTGTATGTAAATAAAGAAAAATATATGTCGGAATGTAAGATTAGAAGCAGTTTG
GAATCTGATACTTCAAAGTACTGCAGCATCTTGAATGTGTTTGGCTATTTGTAGGATGGG
TTTGTAAAATTGACACACACTGAAGTTGCTTTTATGCTGTTTGCTTGATTTTCCAATGAG
GATCTGCAATCCTCTCATCCATTGAACACTTAATTCTTTATCTAGTACTCTAATAGGTCG
TTTGATACGAGGGATAAAAGATAATAATTTCATGATAAAATGCAGGGTTAGGGGTA
