Microarray Probes on PGSC0003DMT400016584
Probe ID | Chip | Probe Sequence |
---|
CUST_9802_PI426222305 |
JHI_St_60k_v1 |
CGCAAAATTGGTCTCAAAATAATGGCTTCCATCATAATTTTATGAGACCTTCTTGACCAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400016584
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400016584 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G36920.1 |
+2 |
2e-94 |
254 |
171/323 (53%) |
Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432 |
Transcript Sequence (1933 bp)
>PGSC0003DMT400016584 1933 pgsc_dm_v3.4
AAATAGGTGAAATAGCACAAACAAGATCTAGTAAAATACTAAGTAGACATCACATATCCA
TCATCTCTCTTTTCTTTTTTTTTATAAAATAAAACTTTCCCCAACAACTTCAACTTCTCT
ATAAGTTATAAGTTCCATCTCCTTTCAATATTTACACAAAAAAAAGTTCATTTTTTTTCT
TCATTTCACACATCAATATAGGTCACGTTGCAACTAAAAATCTACAACTTTTCGAAAATA
GACTCATTTTGGTTCTATCGACAAACCCATTTTATTATACAACAAAAAAAATGTGGAATT
TAAATGATTCCCCCGATCAAATAATGGAGGATGAATCTGATGAAGGTATACCGGTGAGAT
CGGTATCAAATTCAAGTTCATCCGCTGTACTTGTTGCAGAGGACGGTAATTCATCAGAAG
AAGACGGTGAAAGAGGTAAAAAAAAGAAAAGTAGTACACCAGGTAAATTATTCGGTTTTT
CTGTTAACGACGACAATTTGGAACCGCCGATAGTTACCCGGCAATTTTTCCCGGTGGATA
ATGAGTCCACCAATTTTCCAAGAGCACAATGGGCTGGAATTAAATTTTGTGAATCGGAAC
CGCCACTTGTCACCGGATTAGTGGGTAACCCAATTGAGGTGTCACAACAACAGCCAATTA
AAAAAAGCCGCCGTGGACCACGTTCAAGAAGTTCACAGTACCGTGGTGTTACCTTTTACC
GGAGGACTGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAACAAGTTTATTTAGGTA
TGCTTAATTTATTTCATTTTAAAATTATTTATTGTTACTGGTGTTCTTGAAGATAATAAG
TTTAATATCATCTGGTATAGGTGGATTTGATACAGCACATGCAGCAGCGCGTGCATATGA
TAGGGCAGCAATCAAGTTCCGGGGAGCGGAGGCGGACATAAACTTTACCTTGGAGGATTA
CGAAGGTGACTTAAAACAGATGAGCAATTTAACCAAGGAAGAATTTGTGCATGTACTAAG
GAGACAAAGTACTGGTTTTCCAAGAGGAAGTTCCAAGTATAGAGGAGTCACTTTGCATAA
ATGTGGTAGATGGGAAGCTAGAATGGGACAATTCTTAGGCAAAAAGTATGTTTATTTAGG
CCTATTTGATACTGAAGTTGAAGCTGCCAGATCTTATGATAAAGCTGCTATCAAGTGTAA
TGGAAAAGATGCAGTTACCAACTTTGATCCTAGCATTTATGAAAATGAAGTTAACTCAAC
CGAATGTAGTGATAATGCAGCGGACCACAATCTTGACTTAAGCTTAGGAGGTTCAAGCCA
AGAAATGGGGGACAATAGGGGTCAAAATTCTTCATCTAATTTGCAATTGGATGTCCATTG
GGGCCACCAAGGGTCATCAAGGCTTAATAAGCCACGTAGCCAAATCAATTTTGATGGCCA
AAAAAGAAGTGGATATAATGAGACTGAAACATTGCAACTCTTGAGCCAAACGCACCTTAA
TTCGTCAGGCAGAGTGCAACCAAATATTAATGAAATGCAAAAGTTTGGCGAATTTATTAG
AGATGGTGAAACACATATGGTTCAAGCCTATCCCCGGCAATTCAATTCATATCAAGTTCA
GACTTCGAGCAACAATAATGTAGGCCAAATTGGGGCAACAAGTAATTCTCAAGAATGGCA
CCCTAATTATGAGATAATTACAACTGCTGCAGCATCATCAGGATTCCCCCAGCAGATAAT
AAGAACGCAAAATTGGTCTCAAAATAATGGCTTCCATCATAATTTTATGAGACCTTCTTG
ACCATTAATTAATTTCTTCATGTTCTTTTATTAATCTTTGTAAAGAGAAATTAATTAATG
TTGAGATTATTAATACTCTCAAAACATAAACAAACAGATTATATTGGCAGTATATATATG
TTGGAATGAAATT