Microarray Probes on PGSC0003DMT400016258
Probe ID | Chip | Probe Sequence |
---|
CUST_16447_PI426222305 |
JHI_St_60k_v1 |
TTTCACATCTTACCCTTGCTTAGCAACACTTCAGTGTCGTCATCAAGTCTCTAAGACATA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400016258
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400016258 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G07530.1 |
+1 |
0.0 |
632 |
352/698 (50%) |
SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769 |
Transcript Sequence (2854 bp)
>PGSC0003DMT400016258 2854 pgsc_dm_v3.4
GAATAAATGGTCATGGATAGTAGAAACTATAAGGGGTTATATGATGCAACATCTGGAATT
CAATTAAAGGATGACGATGATGATAAGCCATTTTTTCAAGATCTGAATCTGATTAATCAT
CTTAGAGTTAGTGATGCTTTAGTTGAACGAAATCTAGAACCCGTTGATTTCGTTCCATCA
GCTATGGATAACTGTCATGAGGATTATGATTTTAGTGATGTAGTGCTTAAGTATATTAGC
CAAATGCTTATGGAAGAGAATATTGAAGAGAAGACATGTATGTTTCAAGAATCTGCAGCT
CTTCAAGCTGCTGAAAGATCGTTTTACGAAGTTATTGGAGAGAAGTACCCTCCGTCTCCC
ATTCTTGATTTAGGTCAGGATGGACGTTGCGGTGTGGACTCTAGTAGTAATAATTACTAT
AGTTGTGGAAGTGATATTACTGATGGCTTACTATGCCCAAATTGGAATCCTGATCTTGGT
GATGTGGACTCTTCACATACTCAACAATTTGTGATTGATTCTGGGACTTCTCAGTCATCG
CTCAGTTCGCCAAGTAGCTCCGGAACTGTCACTGATGCACATGTGGATTCGCCTGTGAGC
TCAATTCAGATTCCGGACATATTTAGTGATAGTGAGTCGATCATGCAGTTTAAGAAAGGT
GTCGAGGAAGCAAGTAAGTTCCTTCCTACAGGCAATAGTTTGCTCCTTGATGTAAGGTAT
GATGTAGTGGTGAAGGAGGATAATGAAAACGGAAAAGATGCAGTGGAGAATCGTGGGAAA
CAGAAATCTCCCGAAGGATCGAGAGGGAAGAAAAACATTCATCATGATGATGTTGATGTT
ATGGAAGAGAGAAGTAACAAGCAATCTGCAGTTTTCTATGAATCAACTGTTCGATCAGAT
TTGTTTGATAAAGTGTTGCTATGCAGTGGAGGGAAAAATGAATCTGCTCTTCGTGAGTCC
TGGCAGGTGGTATCAAGTAAACATGCTCCAGAGAACGTCCTTCCAAAGGGATCTAACAGT
AGGAAGTCCCGCGGAAAGAAACAGGGGGGTAAAAGAGATGCAGTAGACTTAAGAACCATC
TTGACACTTTGTGCACAAGCTGTTGCTGCGGATGATCGAAGGACAGCAAATGAGTTTCTG
AAGCAGATTAGGCAGAATTCTTCTCCGACGGGGGATGGGATGCAGAGGGTGGCCCATTAT
TTCGCCAATGGTCTTGAGGCACGGATGGCTGGTTCTGGTACTCAGATTTATACCGATTTT
ATTTCGATGCCTACATCAGCAGCTAATATCTTAAAAGCTTACCAGCTATTTCTTGCTGCC
TGCCCATTTAGAAAACTCTTTAACTTCTTCTCAAATAAAACAATTATGAATGTAGCTGAA
ACGGCATCAACAGTGCATATCATAGATTTTGGTATTATGTATGGCTTCCAGTGGCCCTGC
TTCATACAACGTCTCTCTCGTAGACCAGGTGGACCTCCCAAGCTCCGGATAACTGGGATA
GACTTTCCGAATCCTGGTTTCCGACCAGCAGAGAGGGTTGAGGAAACGGGGAGGAGGTTA
GCTGATTATGCTGAGAGTTTCAATGTTCCATTTGAGTTCATAGCTATAGCACAGAAGTGG
GAGACAATTAAAGTGGAGGATCTTAAGATCCAGAAGGATGAGGTTCTTGCAGTAAACTGC
ATGTATCGGTTCAGGAATCTACTCGATGAGACTGTGGTGGTAAATAGTCCTCGGGATATT
GTATTGAATCTCATCCGGAAGTTAAATCCTGATGTTTACGTACAGGGGATCGTAAACGGT
GCTTATAATGCTCCTTTCTTTATCACACGATTCCGGGAGGCACTTTTTCATTACTCGTCA
GTGTTTGATATGCTTGAAGCTAACATTCCCCGTGAAATTCCTGAGAGATTGCTGGTTGAA
AAGTTAATATTTGGCAGGGAGGCAATGAATGTTGTAGCGTGTGAAGCTGCTGAGAGGATT
GAGAGACCAGAAACATATAAACAATGGCAGGTCAGAAATATAAGGGCTGGTTTTAGGCAG
CTTCCTTTGAACGAGGAGATCTTGAGGGTGGCAAAAGATCGTGTAAAGGCGTACCACAAG
GATTTCGTGATTGATGTAGACGGTAAGTGGCTACTGCAGGGATGGAAAGGTCGTATCATG
TATGCAGCTTCAACCTGGAAGGGATCTCTTTGAATCTCTTCTGATTACTCGTGAAGGAGC
AAGTTCATCCGCAAGGCTTTGCCCCTGCCCCTCAACAGTGAAATCGTGTATGGTGCTGGC
CCTTCTGAAGGACAAAGACAACTTTGCATGGACTTGATTATAGCATAAATGTAATTGGTA
CCAACGCAAAGGTTATGTCATGGCTCTGGACAAGGATAAGCGGGAGCAGAACTTGGAATT
TGCTTCCTCATCTTCTCCATTGCAATAACTCGGTAGTGTTCGTTGTCAATGTAGCTGTTA
ACTGACAAAATAGCCCGGTAACAAAACCTTTTCCCCAGAACTTATTTTTCTCCGGACATG
TGAAAAAGTGTGAGCCGATAGGCGATTAAATTGATCGTATGGCATGAAAGGCCTACTCCT
TCATTTGTATTTTACATCTGTGATTGACTACGCCTAAAGTAATAGCAGTCAAAATGATCA
CTGAAGAATTTCCATAGGTATATCACTACTAATGCGTATATTGTGCAATTTCACATCTTA
CCCTTGCTTAGCAACACTTCAGTGTCGTCATCAAGTCTCTAAGACATACTTTTTCTTGCC
GTTTGTGTAGTTCTTGAAAGACAACTTAACAATTGATATTTCATTTTATTTGTGATTCCT
TTTCAATTTCCTTGCCCATATATTTTGTTATTCG