Microarray Probes on PGSC0003DMT400015179
Probe ID | Chip | Probe Sequence |
---|
CUST_40107_PI426222305 |
JHI_St_60k_v1 |
GGAGTAACTCTCCATGTGTACAAATTTATTTTGTGACAAGATATCCTGGTCAATAGAGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400015179
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400015179 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT3G11840.1 |
+1 |
7e-93 |
292 |
171/455 (38%) |
plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470 |
Transcript Sequence (1342 bp)
>PGSC0003DMT400015179 1342 pgsc_dm_v3.4
GAAGAAGTAGAAATACCCAAATATTTTCTGTGTCCAATATCACTCCAAATTATGAAAGAT
CCAGTTACAACAGTTACTGGAATTACATATGATAGGGAAAATATTGAAACATGGTTGTTG
ATGGCGGAGGAAAATGCATATACGTGTCCCGTGACAAAGCAAATTTTGTCTAGAGACACT
GCATTGTTAACACCAAACCATATGTTAGGGAAATTTATTCGATCGTGGACTATATGCAAT
GCTGAGAAAGGGATTGAGCAAATTCCATCGCCTAAATATCCTCTCAACAAATCACATGTC
ATCAGGCTAATTCGTCAGGTGAAAAATCACGATCTTTATTTAGAAGCTTTAAGGAAAATG
GTGACTATGATAAGTGAGAATGAGGAAAATAGGAAGTGTTTAGATGAAGGTGGTGCAATT
AAGGCTATGGTTTTATTTATATTGAGGAGTTTTAAGGAAGGGGAATTAATTATGGGAATT
GAAGAAGCTTTAAGGATTTTCCATCTTGTTTGGAGACCAACACATGAAAACAAACAACTT
GTTAAGGAAAATCATGATCTAATTGAAGCTATTTTATGGATTTTGAAGAGTCGTGAAATG
TGCAACAACAACAATAATCAAGTTGTAACATCAATCAAGACTCATGCAATGCTGGTCCTG
AAAAATGTGATCTCAGTTTCAAGTACAAATCTTTTATCGAGTCTAACACCTGAATTTTTC
CAACAAATGTTGAATAGTTTGAGGAAAAACAATGTAAAATATGTGTCTCAACAAGCAACA
AAAGCAGTGTTACATGTGCTAATAGATACTTGTCCAAGGGGACGAAACAGGCTGAAAATG
ATCGAATTAGGGGCTGTTTTCGAGCTAATTGAGCTTGAATTAAGCAACAATGAGAAGAGG
GTAAGTGAATTAGTTTTTTCACTTTTGTCACATTTGTGTAGTTTAGCTGATGGAAGAGCA
GAATTACTAAAACATGCAGCTGGAATTGCAATTGTTTCTAAAAAGATACTTAGGATTTCT
CCAGCAACAGATGAAAGTGCAATTCAAATTCTTGGATTAATTGCTAAGTTTTCAGCTACA
AAAGAAGTGTTGATGGAAATGTTAAGAGTTGGGGGAGTGACAAAGTTATGCATGGTGATT
CAAGCAAATTGTGAAGCAAGTTTAAGGAAAAAAGCACTGGAAATATTAAGGGCACATAAT
AATGTTTGGAGTAACTCTCCATGTGTACAAATTTATTTTGTGACAAGATATCCTGGTCAA
TAGAGATTTACAATCTCTTTATTTCAATATTTTTTGGTATGATATACTTGTAGAAATTGT
AGCAACATTATATGCTTTTCTT